Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00553 ATGGAGGAAAAGCCATTCCCTGCATGGTCATGGTCTGTTGAACAGTGTCTGAAAGAGTATGGTGTGAAACTGGACAAGGGTTTGAGTACTAATGAGGTTCAGAAGCGGCGCGAGAAGTATGGTTGGAATGAGCTAGCAAAGGAGAAAGGGAAGCCCTTGTGGGAACTAGTGTTGGAACAATTTGATGACATGCTGGTGAAGATACTTTTGGTTGCAGCCTTCATATCATTTCTTTTGGCCTACTTTCATGGAAGTGACTCAGGGGAGTCTGGATTTGAGGCTTATGTGGAGCCACTTGTGATAATTTTGATTTTGGTCCTCAATGCCATTGTTGGTGTTTGGCAAGAGAACAATGCAGAAAAGGCTCTTGAAGCTCTCAAAGAGTTGCAATGTGAGTCAGGAAAAGTGTTGAGGGATGGCTACTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCATGTTGGAGATAAAGTCCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACATTGAGGGCTGAGCAAAGTTCTTTAACTGGAGAAGCTATGCCAGTTCTCAAGGGGACAAATCCTGTTTTCTTGGATGATTGTGAGTTGCAGGCTAAAGAAAACATGGTGTTTGCAGGAACCACTGTGGTCAATGGTAGTTGTGTTTGCATTGTTATCACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAGCAGATACATGAGGCTTCTCAGGAGGAAAGTGACACCCCTTTGAAGAAGAAGCTGGATGAGTTTGGTGGCAGGCTCACCACTGCAATTGGGTTAGTTTGTCTCATTGTTTGGGTTATTAACTACAAGAATTTCATTTCTTGGGATGTTGTGGATGGATTGCCCTCAAACATCCAATTTTCATTCCAAAAGTGTACCTACTATTTCAAAATTGCTGTTGCCCTTGCTGTTGCTGCAATTCCTGAAGGCCTTCCTGCTGTTATTACAACTTGTTTGGCACTAGGCACAAGGAAAATGGCTCAAAAGAATGCTATTGTGAGAAAGCTTCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCTGACAAAACTGGCACTTTGACCACAAATCAGATGGCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTCTAGACTTATTAGTGTTGAAGGCACAACTTATGATCCAAAGGATGGGGGCATTGTTGACTGGGGATGCTATAACATGGATGCTAATTTGCAAGTCATGGCTGAAATATGTGCTGTTTGTAATGATGCTGGGATTTACTTCGATGGTCGCCTTTTTAGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTAGAAAAGATGGGAGTTCCAGATGTGAAGTCAAGGAGCAAAGTTCATGATAGTACACAAGTTGCTGCAAACAACACGATGGATGGCAACACTGTGGTGAAGTTAGGATGTTGTGAGTGGTGGAACAAAAGATCCAAAAGGGTAGCTACATTGGAGTTTGATCGCATTCGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACACGTGCAACTTGCTGATGGATCCTTGGTTCCAATAGATGATCAATGTAGGGAAATACTTCTTCAAAGACTCCAGGAAATGAGTTCAAAGGGATTGCGTTGCTTAGGTTTTGCATTCAACGATGACTTGGGAGAATTTTCAGATTACTATGCTGAAACTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTGTTGGCTTAAGGGACCCTCCCCGTGAGGAGGTTCATAGAGCAATTGGGGATTGTAAGGACGCTGGGATTAGAGTTATGGTAATAACTGGAGATAATAAGGAAATCAAATTGTTCACTAGAGATGACGATCTTACAGGGCAAAGTTTGACTGGTAAGGAATTTATATCTCTTTCTCACTCAGAACAAGTTAAAATATTGTTGAGACCTGGAGGCAAGGTTTTCTCTCGAGCTGAACCTAGACACAAGCAAGAAATTGTTAGACTACTGAAGGAAATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCAGACATAGGCATTGCTATGGGCATAACTGGGACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTTGCTGAGGGTCGTTCTATTTATAATAACATGAAGTCATTCATCAGGTACATGATATCATCCAATGTTGGGGAAGTGATATCCATATTCTTGACTGCTGCTCTGGGGATCCCAGAATGCATGATACCAGTGCAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAGACGTGATGATGCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATTTGGTAATTGGTTCGTATGTGGGACTTGCAACAGTTGGCATTTTTGTGTTGTGGTACACTCAAGAATCTTTTCTAGGCATCAACCTTGTGAGTGATGGTCACACAATCATAGAATTGTCCCAGCTTCGCAACTGGGGGGAGTGCCACTCATGGTCTAATTTCACTGTTGCTCCATTTTCGGCTGGAGGGGGTCGCTTGATCACGTTTTCAAATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACTCTGTCTCTCTCGGTCTTGGTGGCAATTGAGATGTTCAACTCTTTGAATGCACTCTCAGAAGAGAACAGCTTGAGGACATTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATATCATTAGGACTCCATTGCCTCATACTCTATATTCCATTCCTTGCAGAAGTGTTTGGTGTAGTTCCACTTAGTTTGAATGAGTGGTTTATGGTCCTGCTAATATCAGCACCTGTTATTCTCATTGATGAGATTCTAAAATTAGTGGTGAGGAGTCAAAGAAGGTTGTTGACTAAGGAGAAAGAAGCATGA 3138 0.4283 MEEKPFPAWSWSVEQCLKEYGVKLDKGLSTNEVQKRREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLVAAFISFLLAYFHGSDSGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGYFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRAEQSSLTGEAMPVLKGTNPVFLDDCELQAKENMVFAGTTVVNGSCVCIVITTGMNTEIGKIQKQIHEASQEESDTPLKKKLDEFGGRLTTAIGLVCLIVWVINYKNFISWDVVDGLPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTEFFTLGGKTTASRLISVEGTTYDPKDGGIVDWGCYNMDANLQVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVPDVKSRSKVHDSTQVAANNTMDGNTVVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLERSSHVQLADGSLVPIDDQCREILLQRLQEMSSKGLRCLGFAFNDDLGEFSDYYAETHPAHKKLLDPTYYSSIESDLVFVGIVGLRDPPREEVHRAIGDCKDAGIRVMVITGDNKEIKLFTRDDDLTGQSLTGKEFISLSHSEQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRRDDALISSWVLFRYLVIGSYVGLATVGIFVLWYTQESFLGINLVSDGHTIIELSQLRNWGECHSWSNFTVAPFSAGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMSISLGLHCLILYIPFLAEVFGVVPLSLNEWFMVLLISAPVILIDEILKLVVRSQRRLLTKEKEA 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 620 631 - -
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 744 756 - -
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 720 739 - -
Cca11g00553 1045 PRINTS P-type cation-transporting ATPase superfamily signature 642 652 - -
Cca11g00553 1045 Gene3D - 374 627 IPR023299 GO:0000166
Cca11g00553 1045 Gene3D - 26 248 - -
Cca11g00553 1045 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 624 IPR023299 GO:0000166
Cca11g00553 1045 PANTHER CALCIUM-TRANSPORTING ATPASE 5 1040 - -
Cca11g00553 1045 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 301 389 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g00553 1045 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 693 805 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g00553 1045 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 1035 IPR023298 -
Cca11g00553 1045 PRINTS Sodium/potassium-transporting ATPase signature 973 997 - -
Cca11g00553 1045 PRINTS Sodium/potassium-transporting ATPase signature 357 378 - -
Cca11g00553 1045 Pfam E1-E2 ATPase 130 344 - -
Cca11g00553 1045 Gene3D - 361 765 IPR023214 -
Cca11g00553 1045 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
Cca11g00553 1045 SFLD p-type atpase 345 772 IPR044492 -
Cca11g00553 1045 SFLD Haloacid Dehalogenase 345 772 - -
Cca11g00553 1045 Pfam Cation transporting ATPase, C-terminus 805 1031 IPR006068 -
Cca11g00553 1045 Gene3D - 59 1033 - -
Cca11g00553 1045 SMART Cation_ATPase_N_a_2 7 81 IPR004014 -
Cca11g00553 1045 Pfam Cation transport ATPase (P-type) 429 545 - -
Cca11g00553 1045 SUPERFAMILY HAD-like 352 765 IPR036412 -
Cca11g00553 1045 Pfam Cation transporter/ATPase, N-terminus 9 76 IPR004014 -
Cca11g00553 1045 SUPERFAMILY Calcium ATPase, transduction domain A 136 244 IPR008250 -
Cca11g00553 1045 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 5 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00553 Cca-Chr11 8539312 8544427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00553 2 1042 Primary Pumps ATPases(2) AT4G00900 77.683 0.0 1688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00553 K01537 - gmx:100792952 1977.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00553 11 8539312 8544427 Cca11g00553 11 8539312 8544427 ECH