Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00551 ATGATGGTTCTAGATGTGTTATCTTCTGGTCCAACAGGAACAGCCATTTCTCAAACTGTAGAGACCATTGCCGAGTTCCTAATTACTGCTAACGAAGTGCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATCAAGCCTATATTAGAAGAATTAAAGAAAGGAAAAGTCAGTAATTATGAGTCATTTAACCAAGCCATTGAGACCATGAATAAGGAAATTAAAGATGCAAAGCAACTGGCTCAAGAATGCAGCAAGAAGAGCAAGGTTTATCTGCTAATGAACAGCAGGTTCATTGTTAAGAGCTTAGAAAATCACACAGAACAGCTGAGTAGGGCACTTGGTCTTCTGCCTTTAGCCACAACAGGTCTTTCTTCAGGAATCCTTGAAGAAATTGAAAAGCTATGTGACAATATGCAGAGTGCTGGATTTAAAGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATTGATTCAGGGATCAGGGAAAACAATGTCGATCGTTCCTATGCCAATAATTTGCTATTTCTCATTGCTCAGGCTGTTGGGATTAGGAATGATAGGTCAACAATAAAGATGGAACTTGAAAAGTTCAAGAGTGAAATTGAAGATGCACGCCTTAAGAAGGACTTGGCTGAAGCTAGGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAGGGACAAGGAACTCAAATACTTTGCAAAACGCCAATCTTTGGGTAGTCAAATCTTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACTCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCAATAGAAAAGTGGTTTGCAGAAGGAAACAATTTGTGTCCCATGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACATGAGTGGAAGGATAGAAATATAATGATCACAATTGCTACATTGAAAGAAAAAATCCAGTCTGGAAGCGATGAAGAAGTGCTGCATGACCTGCAAACTATTCAGAAATTGTGCGAAGAAAAAGAGCAATACAGGGAATGGGTGATACTGGAGAATTACATAATAACTCTCATCCAAATTCTATCAAGACACCGTGATATAAGGAAACATTCTCTTGTCATCCTCGGCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTTCAACCGTTGACCATGCAATTGAATTAATTGTCCGGTCTCTTGGTCGTCGTCCAGAGGAAAGGAAGTTAGCAGTAGCATTGCTGCTCGAATTATCCAAATATGATTTGGCACGAGAACAGATTGGAAAAGTTCAAGGTTGCATACTATTATTGGTGACTATGACTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACTGAGCTATTGGAGAATCTTTCATACTCCGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTTCACAGGACCGGATGATGTAAAGATGATTATGGCAACAAGTTTAGCAGAAATGGAGTTAGCAGACCACAATAGGGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTTTCAGAAAATGATCTTCAGGTGAAAACAGTTGCTATTAAAGCTCTTAGGAATTTGTCCAGTTCAAAGAGAAATGGACAGGATATGATAAGACAGGGGGCTGCACGACCGCTGCTTCAGCTCCTTTTCAATCAAAACGTACAAACCGCAAGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTGGCTGCATCAACTATTTCTCAGGATGCTCAAACACCTGTTTTATTACTAGAATCTGATGATGACGTTTTTCATCTCTTCAATTTAGTTAGTTTCATGAAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCTTCATATATCAGAACCAAACTAAAAGAGTGCTCAGCTGTTCCAAAATTGGTTCAACTGTGTGAGAATGAAAACCTAAACCTTCGAGCAAGTGCTGTGAAGTTGTTTTCATGCGTGGTGGAGAGTTGTGATGAAGCCATCGTACTGGAGAATGTGGACCAGAAGTGCATTAGTACTTTACTCCGGATCTTAAAATCTTCATCTGATGAAGAGGAAACACTTTCTGCTATGGGAATAATATGCTATCTTCCAGAAATTGACCAGATAACTCAACGGCTTCTTGATGCTGGAGCACTGCCAATCATTAAAAGTTATGTCCAAGATGGGAAAGACAGAGATCATCTAGTAGAGAACGCCATTGGTGCCCTATGTCGATTTACAGTTCCAACAAACGTGGAATGGCAGAAAAGTGCAGCTGAAACCGGGATCATAACTGTTTTAGTGCAGCTTCTTGAGAATGGAACCACCTTGACAAAACAGCGCGTGGCACAGTCTCTTGCTCAGTTTTCTAAAAGTTCAATTCGCCTGAGCAGGCCAATACCAAAGCGAAAAGGACTATGGTGCTTCTCAGCTCCTGCTGATGTTGGCTGCATGGTTCATGGAGGAATATGCTCAGTGAAATCATCATTTTGCCTCTTGGAGGCTAATGCAGTGGGACCACTCACAAGGACTCTTGAGGACTCTGATCCTGGAGTTTGCGAGGCTTCTTTGGATGCTCTATTAACACTAATTGAAGGAAAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTAGTCGAGTTCAAACAGACATATGGAGCCTCAGCTCAAATGCCTCTAGTTGA 2811 0.408 MMVLDVLSSGPTGTAISQTVETIAEFLITANEVLVKKDSFKELAAYMERIKPILEELKKGKVSNYESFNQAIETMNKEIKDAKQLAQECSKKSKVYLLMNSRFIVKSLENHTEQLSRALGLLPLATTGLSSGILEEIEKLCDNMQSAGFKAALAEEEILEKIDSGIRENNVDRSYANNLLFLIAQAVGIRNDRSTIKMELEKFKSEIEDARLKKDLAEARQMDQIIALLERADAASSPRDKELKYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNNLCPMTLIPLDTSILRPNKKLKQSIHEWKDRNIMITIATLKEKIQSGSDEEVLHDLQTIQKLCEEKEQYREWVILENYIITLIQILSRHRDIRKHSLVILGMLAKDNEEAKERISTVDHAIELIVRSLGRRPEERKLAVALLLELSKYDLAREQIGKVQGCILLLVTMTSGDDNQAARDATELLENLSYSDQNVIQMAKANYFKHLLQRLFTGPDDVKMIMATSLAEMELADHNRESLFDGGVLVPLLHMFSENDLQVKTVAIKALRNLSSSKRNGQDMIRQGAARPLLQLLFNQNVQTASLWEDVAAIIMQLAASTISQDAQTPVLLLESDDDVFHLFNLVSFMKPVVQQNIIQTFYALCQTPSASYIRTKLKECSAVPKLVQLCENENLNLRASAVKLFSCVVESCDEAIVLENVDQKCISTLLRILKSSSDEEETLSAMGIICYLPEIDQITQRLLDAGALPIIKSYVQDGKDRDHLVENAIGALCRFTVPTNVEWQKSAAETGIITVLVQLLENGTTLTKQRVAQSLAQFSKSSIRLSRPIPKRKGLWCFSAPADVGCMVHGGICSVKSSFCLLEANAVGPLTRTLEDSDPGVCEASLDALLTLIEGKVSTCFGKDFSASRVQTDIWSLSSNASS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00551 936 CDD RING-Ubox_PUB 263 303 IPR045210 -
Cca11g00551 936 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 13 95 IPR008808 -
Cca11g00551 936 SUPERFAMILY ARM repeat 531 907 IPR016024 -
Cca11g00551 936 SMART arm_5 528 568 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 363 402 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 748 790 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 406 444 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 569 605 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 705 744 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 663 703 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 867 907 IPR000225 GO:0005515
Cca11g00551 936 SMART arm_5 445 486 IPR000225 GO:0005515
Cca11g00551 936 Gene3D - 14 126 IPR036537 GO:0007166
Cca11g00551 936 Gene3D - 336 627 IPR011989 -
Cca11g00551 936 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 910 - -
Cca11g00551 936 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Cca11g00551 936 Coils Coil 193 220 - -
Cca11g00551 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Cca11g00551 936 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 910 - -
Cca11g00551 936 ProSiteProfiles RPW8 domain profile. 1 156 IPR008808 -
Cca11g00551 936 Pfam Armadillo-like 433 603 IPR006911 -
Cca11g00551 936 SUPERFAMILY ARM repeat 333 596 IPR016024 -
Cca11g00551 936 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Cca11g00551 936 SUPERFAMILY RING/U-box 249 329 - -
Cca11g00551 936 Gene3D - 628 914 IPR011989 -
Cca11g00551 936 Coils Coil 65 92 - -
Cca11g00551 936 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Cca11g00551 936 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00551 Cca-Chr11 8521527 8526628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00551 250 915 U-box Gene Family AT1G76390 29.010 4.36e-56 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00551 - - gmx:100799969 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00551 11 8521527 8526628 Cca11g00551 11 8521527 8526628 ECH