Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00541 ATGGAATATACTTATTCAGCAGAGGCTGAAACTTACACAAGTAGCAGCACCACCCCTTCAACTGCCCTCAGAAAGAAGAAAaacaacaacaacaacaacaacaacaacaacaacaacaacaCAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAGAACATGTTTGAGACTGAGTCAAGGCTTGAGCCTAGAAAGAAGCTGCAGCTTGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCCAGGTGGAAGTCAAAGCAACTAGAGAGGGACTATACCATACTCCAAACCAATTATAACACCCTGGCCTCACGTTTTGAAGCTCTAAGGAAGGAAAAGCAAACATTACTAATACAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCGTTGGAGCCAGGTGAGAAATGCACACAGGTTGAAGCAGCAAACAGCGTGGACAGTGAATCAGAATATGGGGGCACCATGAAATGTGAAGCTGAGGAAAAGCCAAGCCCTTCAATGGAAAGATCAGAACATGTGTTTGGTGTTCTGTCAGATGATGACACGAGCATAAAGGTGGAAAACTTTGGCCTAGAAGATGAACCTGGTCTTCTGAATTTTGCTGAGCATGCTGATGGTTCCTTGACTTCACCAGAAGATTGGGGTGCTTTTGAATCCAATGATCTCTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 744 0.4207 MEYTYSAEAETYTSSSTTPSTALRKKKNNNNNNNNNNNNNTRRFSDDQIKSLENMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILQTNYNTLASRFEALRKEKQTLLIQLQKLNHLMQKPLEPGEKCTQVEAANSVDSESEYGGTMKCEAEEKPSPSMERSEHVFGVLSDDDTSIKVENFGLEDEPGLLNFAEHADGSLTSPEDWGAFESNDLLGQSTSDYQWWDFWS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00541 247 Gene3D - 33 102 - -
Cca11g00541 247 Pfam Homeobox associated leucine zipper 95 137 IPR003106 GO:0006355|GO:0043565
Cca11g00541 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 247 IPR045224 GO:0003700
Cca11g00541 247 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Cca11g00541 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 17 247 - -
Cca11g00541 247 MobiDBLite consensus disorder prediction 7 45 - -
Cca11g00541 247 Coils Coil 115 135 - -
Cca11g00541 247 MobiDBLite consensus disorder prediction 1 45 - -
Cca11g00541 247 CDD homeodomain 42 96 IPR001356 GO:0003677
Cca11g00541 247 SMART HOX_1 38 99 IPR001356 GO:0003677
Cca11g00541 247 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677
Cca11g00541 247 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677
Cca11g00541 247 SUPERFAMILY Homeodomain-like 37 105 IPR009057 -
Cca11g00541 247 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Cca11g00541 247 Pfam Homeodomain 42 93 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00541 Cca-Chr11 8206852 8208308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00541 16 247 Homeobox Transcription Factor Family AT2G46680 50.199 2.35e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g00541 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00541 K09338 - gmx:100797862 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00541 11 8206852 8208308 Cca11g00541 11 8206852 8208308 ECH
Cca11g00541 11 8206852 8208308 Cca03g03182 03 53251101 53251934 ECH
Cca03g03182 03 53251101 53251934 Cca11g00541 11 8206852 8208308 PCT