Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00537 ATGACCAGAACGGCAGCCGGCGACCACCGCGTGATCAGAACGGCAGCCAGAACCACCGCAACCACCGCGAGCGCCAGAACCCCCCCGCGTGCGACCCAGAACCCCTCCGCGTGCCCCTCCGAGCGCGACCCCTCAGCCCAGACCACCTCCGCGCGCCACCTCATCACTCCACAAACACACACTCTTGTTCCCATGGAGGACCTAATCATctctccttcttcatcctcttccctcatctctctatcccATGAAAACCCATCCCCAACGCTCACCCTTCAGCAAAAGCTTCAATTTTTACTCCAAACCCAACCCGAATGGTGGGTCTACGCCATTTTCTGGCAGGCCTCCAACGACGAAAATGGCAACCTCTTCTTATCCTTCGGAGAGGGTCACTTCCAAGCCACCCACAAACAAACTTCCCCTAAATCACTCCCCCCTAAGAAGCTCACAAACAACAACATCAACGACGCCGAGTGGTTCTACGTCATGTCCTTGACTCGCACCTTCCCCGTCACCAATGCTTCTTCTTCTTCTTCACTCCCAGGCAAATCCTTAGCCCAAGGCTCCGTGCTCTGGCTCAACAACAACAAACACGACCTCCAATTCTACAACTGCGAAAGAACCAACGAGGCCCACGTGCACGGCATCCAAACCCTAATCTGCATCCCCACGCAAAACGGCGTCGTCGAAATGGGCTCCTACGACTTCATCAAACAAAACTGGTCCCTCGTCCACCACGTCAAGTCCCTCTTCGAAAATCCCAACCCGCTTCCCCTCGACAACCACCAAACCCTCTCCTTCGCCGACGACGTCGCCGGCACCCAAGAAACCAAAAAACGAAAACTCACCCAAACACCTCCCAACAACAACAACACCTCTTCCTACGTCGACTCCGAACACTCCGATTCGGACTGCCCCACTCCCACGTTGCCCACGCTCGCCGAACCCAAAAAGAGAGGCCGAAAACCCGTTCCCGGCCGCGACACCCCAACCAACCACGTCGAGGCAGAGAGACAGCGGAGAGAGAAGCTGAACCACCGCTTCTACGCGCTGCGGGCGGTGGTCCCGAACGTCTCGCGCATGGACAAGGCTTCTCTGTTATCCGACGCCGTGGATTACATCAACCAGCTGAAAGCGAAGATCGAGTTGTTGGAGTCGCAGCAGCAGAGGGAGACCAACAAGAAGGTCAAAACAGAAATGGCGGACACCACGGACAACCAGAGCACTGCCACGACGTCCACAGTGGTCGACCAAGGGCTTGTCCTAGGGCTTGAGGTGGATGTGAAGATTGTGGGCCCCGACGCCATGGTGAGGGTTCAGTCCGAGAATGTTAACCACCCCGGCGCCAGGCTTATGGGTGCATTGCGTGACTTGGAGTTTCAGGTGCACCACGCTAGCATGTCCTCCGTTAACGATCTCATGCTTCAGGATGTGGTGTTTAAGGTTCCCAATTCCATGAGGAGCGAAGAGGGTCTTAGATCTGCCATTCTCATGAGGTTAGATTAG 1506 0.5471 MTRTAAGDHRVIRTAARTTATTASARTPPRATQNPSACPSERDPSAQTTSARHLITPQTHTLVPMEDLIISPSSSSSLISLSHENPSPTLTLQQKLQFLLQTQPEWWVYAIFWQASNDENGNLFLSFGEGHFQATHKQTSPKSLPPKKLTNNNINDAEWFYVMSLTRTFPVTNASSSSSLPGKSLAQGSVLWLNNNKHDLQFYNCERTNEAHVHGIQTLICIPTQNGVVEMGSYDFIKQNWSLVHHVKSLFENPNPLPLDNHQTLSFADDVAGTQETKKRKLTQTPPNNNNTSSYVDSEHSDSDCPTPTLPTLAEPKKRGRKPVPGRDTPTNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINQLKAKIELLESQQQRETNKKVKTEMADTTDNQSTATTSTVVDQGLVLGLEVDVKIVGPDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSSVNDLMLQDVVFKVPNSMRSEEGLRSAILMRLD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00537 501 PANTHER TRANSCRIPTION FACTOR BHLH14 65 500 - -
Cca11g00537 501 PANTHER MYC 65 500 IPR045084 GO:0003700|GO:0006355
Cca11g00537 501 MobiDBLite consensus disorder prediction 275 339 - -
Cca11g00537 501 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 92 251 IPR025610 -
Cca11g00537 501 Gene3D - 326 406 IPR036638 GO:0046983
Cca11g00537 501 MobiDBLite consensus disorder prediction 389 410 - -
Cca11g00537 501 MobiDBLite consensus disorder prediction 315 339 - -
Cca11g00537 501 MobiDBLite consensus disorder prediction 278 308 - -
Cca11g00537 501 MobiDBLite consensus disorder prediction 15 49 - -
Cca11g00537 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 389 IPR036638 GO:0046983
Cca11g00537 501 Coils Coil 367 394 - -
Cca11g00537 501 Pfam Helix-loop-helix DNA-binding domain 331 378 IPR011598 GO:0046983
Cca11g00537 501 SMART finulus 334 383 IPR011598 GO:0046983
Cca11g00537 501 MobiDBLite consensus disorder prediction 1 49 - -
Cca11g00537 501 CDD bHLH_AtAIB_like 326 395 - -
Cca11g00537 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00537 Cca-Chr11 8052427 8055499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00537 88 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.727 8.76e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00537 bHLH-MYC_N 3.3e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00537 - K13422 ccaj:109806068 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00537 11 8052427 8055499 Cca11g00537 11 8052427 8055499 ECH