Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00529 ATGCCGACTGGACCCTCCCCAACTCGTCTAATATCCGACTGGTTTCCCAGGCCACAAGCCCTCTCGCCTTATCGGCTCAGGGCTGGAAGGCAAGTGTACATTCCCGGTAAAATGCCGACTGGACCCTCCCCCACTCGTCTTTCTCCCGACAGGTCCCTTAGTACGGGCCTTGCCGCGGTTGAAGCTGTAAATGCCTCTGAGTTTTACATGGGGAAGAAGGGGAGTGGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGACAAAAGGAGTGGCagaagaagagaggactgtgaccaagaagaagatgaagagaagAAGAGGGAGAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATGAAGGTGTGAACAACAACACTCAACAAAAGTTGAAGCATGATGTGGTGCCAAGTGGGGGTTCAAGGACGGAGCAGGATCAAAACCATGCACTTGCGGTGGCGGTGGCCACCGCAGAAGCTGCCATGGCCACCCCTCACGCGGCGGGGGGGGGGGGGAGGGCGGCGGTGGAGGTGGCAAGGTTGACCAAACCTGCTAGCCATGTTGGGGAGCATCGTGCTGCTGTTACCATTCAAACTGCTTTCAGAGGGTATCTGGCAAGAAGGGCACTTCGTGCACTTAAGGGGTTGGTGAAGTTGCAAGCCTTAGTTAGAGGGCACAATGTTAGGAAGCAGGCTAAGATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAGGCAAGGGTCCTTGACCAGCGTATAAGGTCTTCACTTGAAGGTAGTAGAAAATCAACTTTCAGTGATACTGCTAGTGTTTGGGACTCAAGGTATCTTCAGGACATTTCGGATAGAAAATCAATGTCAAGAGAGGGAAGCAGCATTGCAGATGACTGGGACGAACGTCCTCACACGGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGGGACAAGAACTTATCCCACGCCTTCTCCCAACAGATATGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTAGAAGAGAGACCAAAATGGCTAGACCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGATCCCATTAAGACTGTGGAGATTGACACCTCTCAGCCTTATTCATATCTAGCAACCAACTACAGAAGATCACATCCTAATTATCAATACAATCCACACCATCACCAACCACAAAGGCATTCCATTGCCTCCCCAATCCATAGATCTCACCAAAACGGTTCCCTTCAATCCCCAGCAACTCCTTCTCCTGCCAAGTCAAGGCCTATCCAAATCCGGTCGGCGAGCCCACGATGCATTAGAGAAGACAGAAGCTACCACACCTCACAGACACCGAGCTTGAGGTCTAACTACCACTACACAGGAAGCTTGTACCAAAATGGAAGGGTTGGAACAAGCAGTGGTAGTGGCAATGGTGGTGGTGCTACATTGCCTAATTACATGGCGGCAACCGAGTCTGCGAAGGCTCGAATCCGGTCACAAAGTGCGCCTAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCCAAGAAAAGGCTTTCTTTCCCAGCTCCTGATCCTTATAGTGTGGGAGCGAGTTATGGAAATTATGGTCATAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCATCAGTCCAACTACTCATCTTGCTGCACTGAGAGTATTGGTGGTGGTGAGGTTTCTCCTTCTTCAACCGGTGACCTTAGAAGGTGGTTGAGATGA 1848 0.494 MPTGPSPTRLISDWFPRPQALSPYRLRAGRQVYIPGKMPTGPSPTRLSPDRSLSTGLAAVEAVNASEFYMGKKGSGSSWLTAVKRAFRSPTKDTDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGVNNNTQQKLKHDVVPSGGSRTEQDQNHALAVAVATAEAAMATPHAAGGGGRAAVEVARLTKPASHVGEHRAAVTIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLEGSRKSTFSDTASVWDSRYLQDISDRKSMSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKNLSHAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLATNYRRSHPNYQYNPHHHQPQRHSIASPIHRSHQNGSLQSPATPSPAKSRPIQIRSASPRCIREDRSYHTSQTPSLRSNYHYTGSLYQNGRVGTSSGSGNGGGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGASYGNYGHSLRSPSFKSVSGSHFGLEHQSNYSSCCTESIGGGEVSPSSTGDLRRWLR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00529 615 MobiDBLite consensus disorder prediction 88 153 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 593 615 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 88 126 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 432 454 - -
Cca11g00529 615 Pfam Protein of unknown function (DUF4005) 460 564 IPR025064 -
Cca11g00529 615 MobiDBLite consensus disorder prediction 375 390 - -
Cca11g00529 615 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 75 615 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 470 484 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 516 551 - -
Cca11g00529 615 Gene3D - 198 251 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 432 484 - -
Cca11g00529 615 SMART iq_5 198 220 IPR000048 GO:0005515
Cca11g00529 615 SMART iq_5 221 242 IPR000048 GO:0005515
Cca11g00529 615 ProSiteProfiles IQ motif profile. 199 227 IPR000048 GO:0005515
Cca11g00529 615 PANTHER IQ-DOMAIN 5-RELATED 75 615 - -
Cca11g00529 615 MobiDBLite consensus disorder prediction 33 53 - -
Cca11g00529 615 Pfam IQ calmodulin-binding motif 226 242 IPR000048 GO:0005515
Cca11g00529 615 Pfam IQ calmodulin-binding motif 200 220 IPR000048 GO:0005515
Cca11g00529 615 MobiDBLite consensus disorder prediction 375 396 - -
Cca11g00529 615 ProSiteProfiles IQ motif profile. 223 250 IPR000048 GO:0005515
Cca11g00529 615 MobiDBLite consensus disorder prediction 128 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00529 Cca-Chr11 7694159 7702360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00529 70 615 IQD Protein Family AT1G01110 57.018 1.02e-175 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00529 - - gmx:100786729 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00529 11 7694159 7702360 Cca11g00529 11 7694159 7702360 ECH