Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00526 ATGCCGGAAAACATGAGCATATCAGTGAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTTCACCCAACAGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCCTACGAAAAGATTGACCTCGATGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGAGAAATGCAAAATAGGAACAACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACTGGAACGCGCACCAATCGCGCCACTGCTGCAGGGTTCTGGAAGGCCACTGGCCGCGACAAAGTTATATACAGCAACGGTAAGAGAATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACACGGCCAGAAATCCGATTGGATCATGCATGAATACAGGCTCGATGACAACACCACCAGCGACACCAACATCGTGTCGAATGTGATGGGAGATGGTGGACAAGAAGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCTCTAGGTTCTGGTGAAGGTAGAAGGAGCCACAGCCACTTGTTTGACTCGTGCGACGAGGGAGCTTTGGAGCAGATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGTAGCTACGAGGGAAACTAcaacaacaacagcaacagcaacagcaacagcaacaACAGCATGAACTATGGAAGGTTGGTAAGGCCTTTCGACAATGAGAGGTTCATGAAGCTGCCAAGCCTGGAGAGCCCAAAATCCACAAGCATGGAGAGCCAGCACAATAATAATGGTGATAAGAATGATGGGTACCATCCCATAATTCCTGTGGAGATGGGCACGGACAATGAAGGGTCATTCGCAACCCACCAGCACCAGGTGAGTGGTTCTGACCCCAGCATGGTTCACGCATTGGAGGTAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTCGCGTCTCAACTCAATGGCCAGACCGAGGCCTCTAGGCAATTGGCCTGCTTCAACGACCCCACCATCGGCTATTGCACCACCGACCATGATCTTCAATTGCCAACCCTCCGATCCTCATCAACGCCTTCATCAACGTCGGCACACGCTAGGCTTCATGCTCCTCCCGCATCCTACATCAACCCCACACAGGACTTCACCAGCGAGATTGACCTTTGGAACTTCACTCGATCCACGTCCTCCTTGCTGGCTTCCTCAGAACCACTGTGCCACGTGTCCAACACGTCAGTCTAG 1302 0.4992 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEGRRSHSHLFDSCDEGALEQILQQMGRGCKEESSYEGNYNNNSNSNSNSNNSMNYGRLVRPFDNERFMKLPSLESPKSTSMESQHNNNGDKNDGYHPIIPVEMGTDNEGSFATHQHQVSGSDPSMVHALEVGSGGGGLTNWAALDRLVASQLNGQTEASRQLACFNDPTIGYCTTDHDLQLPTLRSSSTPSSTSAHARLHAPPASYINPTQDFTSEIDLWNFTRSTSSLLASSEPLCHVSNTSV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00526 433 MobiDBLite consensus disorder prediction 261 282 - -
Cca11g00526 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 383 - -
Cca11g00526 433 MobiDBLite consensus disorder prediction 262 280 - -
Cca11g00526 433 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Cca11g00526 433 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Cca11g00526 433 MobiDBLite consensus disorder prediction 374 396 - -
Cca11g00526 433 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Cca11g00526 433 MobiDBLite consensus disorder prediction 223 246 - -
Cca11g00526 433 MobiDBLite consensus disorder prediction 214 246 - -
Cca11g00526 433 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Cca11g00526 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00526 Cca-Chr11 7585246 7587829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00526 1 432 NAC Transcription Factor Family AT2G46770 53.933 3.63e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g00526 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00526 - - gmx:100793308 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00526 11 7585246 7587829 Cca11g00526 11 7585246 7587829 ECH