Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00521 ATGTATGAAATAGCACAGAGAAAGGAAAAAAAGATGGTGGGTGGTAACAACAATTCGAGGCAACACAATGACACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGAGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTATTATCACAGACAAGAACACCGGCAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAAAAAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGGAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGTACACAGGCTCCACAACATGGACGGTTTAGAGCAGCACCTGGTGTTTTGGCCTCACCTGCTTATCATGGCCCCTCCTCAACACTTGTCCATCAAAACAGTGGGCAACACACACTTACTTATCCAACTTTTGGGGGATATACCGGATATTCACAAGATAATATGTACCCCATGAACTGTTATGGGGTATATGGAGGTCAACCGTTCTCAACTTACTACCCCTCCAATGGGGCATCTGGGCCAGTGGGAATTGTCCATAACATTTACCCTTTTTCTGCTCAATATGGATACAATAGCCAAGCTCAAGGTTTTGGAGTCCAATATCCCCAAATGATGCAATTTCCAATCGTCCCTAGGCACTATGGCTCAGCTGGCACCCTTACATTTCCCTCTTCAATGGCAATGCCAACTATTAGTGCAGTTacaacaacagcaactacaacaacaacaGAATTGATAGGAACAAGTGCAGATGCTTCACAAACCACTAGAACAACTTCTGAGCAAAATTCCTCAGCTGAATCACTACAGAAATAA 867 0.4221 MYEIAQRKEKKMVGGNNNSRQHNDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIASIGANKNRTQAPQHGRFRAAPGVLASPAYHGPSSTLVHQNSGQHTLTYPTFGGYTGYSQDNMYPMNCYGVYGGQPFSTYYPSNGASGPVGIVHNIYPFSAQYGYNSQAQGFGVQYPQMMQFPIVPRHYGSAGTLTFPSSMAMPTISAVTTTATTTTTELIGTSADASQTTRTTSEQNSSAESLQK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00521 288 SUPERFAMILY RNA-binding domain, RBD 10 116 IPR035979 GO:0003676
Cca11g00521 288 MobiDBLite consensus disorder prediction 1 25 - -
Cca11g00521 288 Gene3D - 2 120 IPR012677 -
Cca11g00521 288 PANTHER - 5 273 - -
Cca11g00521 288 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g00521 288 CDD RRM_RBM24_RBM38_like 28 103 - -
Cca11g00521 288 SMART rrm1_1 29 101 IPR000504 GO:0003723
Cca11g00521 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Cca11g00521 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 88 IPR000504 GO:0003723
Cca11g00521 288 MobiDBLite consensus disorder prediction 263 288 - -
Cca11g00521 288 PANTHER BOULE-RELATED 5 273 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00521 Cca-Chr11 7383890 7386979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00521 24 104 C2H2 Transcription Factor Family AT2G19380 40.741 6.12e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00521 - - gmx:100782484 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00521 11 7383890 7386979 Cca11g00521 11 7383890 7386979 ECH