Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00517 ATGGCTGAGTTGAACGGTGCCATGGAGGAGCAGAAGGTCACCAACAACGATCGCTTTGCGGAGGTGGTTCGCTGGGAGAGGTTTCTGCCTCGGATGGTTCTCAGAGTGCTGCTTGTTGAAGCTGATCATTCCACTCGTCATATCATCACTGCGCTTCTTCGCAAATGCAGTTACTCAGTTATTGCGGTTCCTGATGGATTAAAGGCATGGGAAACGTTGAAGAGGAAGGCGCCTGATCTAGATCTAATATTAACAGAAGTGGAGTTGCCCGCGATATCTGGATTTGCACTTCTTTCTTTAATTATGGAGCATGACACTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGTGTTGAAATGCATGTTAAAAGGGGCGGTTGATTTTCTTATAAAACCCATTCGGAGGAATGAGCTTCGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTATAACGGCTCCTACTCATAATACAACATTTTCACCGAAAAAGCTTCAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCCAGTGGTTTTGTGGCTTCCTCAAAGAAAAACAACGAATGCAGCGAGAGATTAAGTGAGGCTCAAAGTACTTGTACATCGCCAATTTTGGAAGCTGAGAGTACATATGTGGATAATATGCAGGACGCATACCAGCTGAAGAGTTCTAAGTTGAGCAAAATTGATATGGTGAAGCATGAAGAGTTTACCGAATTTGAAAGGGAATCAGCCAAGCATAATGACGATACAGGAGATAAGTCAATTACTATTGTAACAGAGGCTGCATGGTGCGACAAAACTTTTGAATTGACAGATTTAACACTAGAACAAGACCATGGTTGTGCTGAATCTGAAAACAAGGATGAAATTTTAAAATCTGAGTCAGGAAGAGATAATCCTAGTAGTAGTACTGAAATACATGGATGCAGTGATGAACGGGTAGAACCTTCTAATGGAGCTATTGACTTGATTGCCACATTTGGGAATCCTTCAAAGCACCCTGATGAAAACTGTTGTCTCAAAGATGGTAATACAATCAAGTTTGATTGTGATGCACAATTGGAACTTTCTTTAAAAAGTGATTTTCCTGGCGGCTCATGTAAACAAGCAAGCGAAGCAACTGAAGAATCTCCAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGGTATACAAATAGTAAATCGTTGCAGCCTCTTTTTCCAACACCGACAATTGCATCTGCTAAAGTAAACAACCCCAATTGGGATTCTCACGAATCCTATAAACTATCTGTAATTACTTCTGGAAATGGTTGTCAGTATGGTGGCTCTAATCAGAATCTGGAGAATATGATCAGTACAGTCATTGGTCAGAATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGACTCTTACCTGTTTCAGGGGTTATTTCCAATCTTAATTCCAAGGGACATGGTAATGTTTTCCCTTCTGTGTTCTATGCACAACCTGGCTTTCATCCCATGTGGAATCCGAAACCAGTCTGCCAGAATGAGAGTTCTCCCTTTCCCACTAGTAACTCCTCCCAGTCCAATCCTGAAAGTAACAATTCAGATCAACATCCTGAAAGTCCCAAATGTCTTAATCAAAATGTAAAGGATAATAATGATTCGGATCATGCAAGGCATGATTCTCCTGCTGCTGAGCGTAGTTTATGCCATGAAACTGCAAATCATGTTAGTATTAGTGCATATGGAAGCATGGAGAGTGCAAACGATGGAAATGCTACTTCAGCTATAGTATCCAATAACAACCCGGAAGGTTTCAGTGATAGTGGTTGCCATAATTATGATGGATTCAGAGTGACAGATTCTCATCACTCCAGTCAAAGAGAAGCGGCTCTGACCAAGTTTCGACTGAAGAGGAAAGAAAGATGCTTCGAGAAAAAGGTTCGATATCAAAAACGGAAGAGACTGGCAGAGCAACGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTCGCCGAGGCTGGTGGTGATTCATGA 2064 0.4157 MAELNGAMEEQKVTNNDRFAEVVRWERFLPRMVLRVLLVEADHSTRHIITALLRKCSYSVIAVPDGLKAWETLKRKAPDLDLILTEVELPAISGFALLSLIMEHDTCKNIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRRNELRNLWQHVWRRHAITAPTHNTTFSPKKLQTASEDNSASNKSSGFVASSKKNNECSERLSEAQSTCTSPILEAESTYVDNMQDAYQLKSSKLSKIDMVKHEEFTEFERESAKHNDDTGDKSITIVTEAAWCDKTFELTDLTLEQDHGCAESENKDEILKSESGRDNPSSSTEIHGCSDERVEPSNGAIDLIATFGNPSKHPDENCCLKDGNTIKFDCDAQLELSLKSDFPGGSCKQASEATEESPRLNHSNTSAFSWYTNSKSLQPLFPTPTIASAKVNNPNWDSHESYKLSVITSGNGCQYGGSNQNLENMISTVIGQNGQVKPKLSNSQCGLLPVSGVISNLNSKGHGNVFPSVFYAQPGFHPMWNPKPVCQNESSPFPTSNSSQSNPESNNSDQHPESPKCLNQNVKDNNDSDHARHDSPAAERSLCHETANHVSISAYGSMESANDGNATSAIVSNNNPEGFSDSGCHNYDGFRVTDSHHSSQREAALTKFRLKRKERCFEKKVRYQKRKRLAEQRPRVKGQFVRQVHNDHPVAEAGGDS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00517 687 MobiDBLite consensus disorder prediction 512 571 - -
Cca11g00517 687 MobiDBLite consensus disorder prediction 514 552 - -
Cca11g00517 687 CDD psREC_PRR 36 139 - -
Cca11g00517 687 Gene3D - 32 275 - -
Cca11g00517 687 SUPERFAMILY CheY-like 34 161 IPR011006 -
Cca11g00517 687 Pfam CCT motif 631 673 IPR010402 GO:0005515
Cca11g00517 687 MobiDBLite consensus disorder prediction 553 570 - -
Cca11g00517 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 230 IPR045279 GO:0009736
Cca11g00517 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 234 683 IPR045279 GO:0009736
Cca11g00517 687 MobiDBLite consensus disorder prediction 288 305 - -
Cca11g00517 687 MobiDBLite consensus disorder prediction 288 325 - -
Cca11g00517 687 SMART REC_2 34 149 IPR001789 GO:0000160
Cca11g00517 687 MobiDBLite consensus disorder prediction 164 191 - -
Cca11g00517 687 ProSiteProfiles CCT domain profile. 631 673 IPR010402 GO:0005515
Cca11g00517 687 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Cca11g00517 687 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Cca11g00517 687 PANTHER PRR RESPONSE REGULATOR 234 683 - -
Cca11g00517 687 PANTHER PRR RESPONSE REGULATOR 14 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00517 Cca-Chr11 7316589 7321209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00517 594 676 Response Regulator Gene Family AT5G24470 55.422 1.91e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Cca11g00517 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00517 K12130 - gmx:100791698 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00517 11 7316589 7321209 Cca11g00517 11 7316589 7321209 ECH
Cca11g00517 11 7316589 7321209 Cca03g03203 03 53409665 53414304 ECH