Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00512 ATGGAAGCACAAAGCTCTCAGCATTCGCAAGTTATTGAGATCAGTGGAGATTCTCCTGATGGCGGAAGGAAGATTTGCGGGGAAGCACCATGTGGGTTTGCAGACGCTGGATCCATCTCTAAGGATTCTGAGGAAAGATCAACATCTATGCGAAAGCTATTGATGGCAGTGATTCTTTGTGTTATTTTCATGACGGTTGAAGTTGTTGGCGGCATCAAGGCAAACAGTCTTGCCATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCCTTTGCCATCTCCTTATTTTCTTTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGGATAGAGATTCTTGGTGCTTTGGTTTCTATCCAGTTAATATGGTTGCTTGCTGGAATTCTGGTATACGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGGTTTTTAATGTTTCTAGTTTCTGCATTTGGTCTTGCGGTTAATATCATTATGGCTTTGTTGTTGGGTCATGATCATGGCCATGGCCATGGTCATGGACATGACAGTCATGGACATGGACACGGTCACGGTCACGGCCACAGCCACGATAGTCATGGCCACAGTCATGGAATTTCTGTGTCGACTCATCATGATGCTAAGCATACAAAAGATGAGCATCATCACACACATGATGATCATGAACACCATCATGATGAAAAGCATGAACATACTCATGATGATCAAGAACACCATCATGCTCACAAAGAGGTTACTGAACCTCTTCTTGGTGAATCAAAAGATGGAACTAAGAAGAGGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTGCATGTGCTTGGGGACTCAATCCAGAGTGTTGGAGTAATGATTGGGGGAGCAGTGATATGGTATGAACCTCGATGGCAAATAGTTGATTTAATTTGCACTCTAATATTTTCTGTCATTGTTTTGGTGACAACTATCAATATGCTGCGTAACATTTTGGAAGTCCTGATGGAAAGCACACCTCGTGAGATTGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCTGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTAGCTTGTCATGTTAAAATCAGACGTGAAGCAGATGCAGACATGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGTCATGTAACTATACAGATAGAGCGCTAG 1257 0.428 MEAQSSQHSQVIEISGDSPDGGRKICGEAPCGFADAGSISKDSEERSTSMRKLLMAVILCVIFMTVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIDRIIAGPKNVDGFLMFLVSAFGLAVNIIMALLLGHDHGHGHGHGHDSHGHGHGHGHGHSHDSHGHSHGISVSTHHDAKHTKDEHHHTHDDHEHHHDEKHEHTHDDQEHHHAHKEVTEPLLGESKDGTKKRKQWNINVQGAYLHVLGDSIQSVGVMIGGAVIWYEPRWQIVDLICTLIFSVIVLVTTINMLRNILEVLMESTPREIDATKLERGLLDMEDVVAVHELHIWAITVGKVLLACHVKIRREADADMVLDKVIDYIKRVYNISHVTIQIER 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00512 418 TIGRFAM CDF: cation diffusion facilitator family transporter 50 418 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca11g00512 418 Gene3D Cation efflux protein transmembrane domain 49 339 IPR027469 -
Cca11g00512 418 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 418 - -
Cca11g00512 418 Pfam Cation efflux family 53 340 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca11g00512 418 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 346 417 IPR036837 -
Cca11g00512 418 SUPERFAMILY Cation efflux protein transmembrane domain-like 47 341 IPR027469 -
Cca11g00512 418 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00512 418 MobiDBLite consensus disorder prediction 181 269 - -
Cca11g00512 418 MobiDBLite consensus disorder prediction 186 203 - -
Cca11g00512 418 MobiDBLite consensus disorder prediction 204 269 - -
Cca11g00512 418 PANTHER METAL TOLERANCE PROTEIN A1 1 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00512 Cca-Chr11 7263248 7267866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00512 1 418 Inorganic Solute Cotransporters AT2G46800 68.235 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00512 K14689 - gmx:100790458 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00512 11 7263248 7267866 Cca11g00512 11 7263248 7267866 ECH