Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00511 ATGCTCATGGAGAGACCCCTCAATTCATGTTTTTTCGGAGATCACTTGGGTTTGGACCAAGTTCTGGTGGACGCAGAAGGCTTGAGACTTGAGGAGGAAGAGCAACTTCTGATATCAAGCTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGATTTTCCCTCTCAAAGAGCCAAACTTTCAAACGCTCCTGAGGCTTCAGCACCTCAAGAAACCATGGGAGGGTTTAGCATGCATTCCGAGAATGGAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCTCTTTCAGTTTCATGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACAACACCACAAAACGGCACAATCATGCCCCAAATCTCAGCCTGCAGCCATAAGGGAAAGGagaaagagaaaaagaacaaggccaagcaagaacaagGAAGATGTGGAGAACCAACGCATGACACACATTGCTGTCGAACGCAACCGGCGACGCCAAATGAATGACCACCTCACTGTCCTAAGGTCCCTCATGCCCCCTTCATATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGTTGCTTCAGTCCCTGGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGGTGGTTCTTCTTCACAACCATCATCATTATTATCACCACATGGATATGGAGTGAGGTCATCATCGAGTGAGGAAATGAACTGTGGAGATGAGGTTAAGGCAGAAAACAAGTCAGAGGCTGCAGACATAAAGGTGACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCGAAGGAGGCCAGGGCAATTGATAAAAGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACATCCTCAGACACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGACTGTAAGCTATGTTCAGCAAGTGACATTGCAGAAGCGGTTCATCAAATATTCAGCTACATTAATGGAAGCTAA 1110 0.4459 MLMERPLNSCFFGDHLGLDQVLVDAEGLRLEEEEQLLISSLEDNMPFLQMLQSVESPQIFPLKEPNFQTLLRLQHLKKPWEGLACIPRMEAALELESCVTHDMLEMQSPVKSESNELQHPLSVSCVEKVSYECNQEQHHKTAQSCPKSQPAAIRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLTVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGGSSSQPSSLLSPHGYGVRSSSSEEMNCGDEVKAENKSEAADIKVTLIQTHVNLKIECRRRPGQLIKVIVALEDLRLTILHLNITSSDTSVLYSLNLKIEEDCKLCSASDIAEAVHQIFSYINGS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00511 369 MobiDBLite consensus disorder prediction 137 178 - -
Cca11g00511 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 240 IPR036638 GO:0046983
Cca11g00511 369 CDD bHLH_AtFAMA_like 176 242 - -
Cca11g00511 369 MobiDBLite consensus disorder prediction 243 269 - -
Cca11g00511 369 MobiDBLite consensus disorder prediction 236 277 - -
Cca11g00511 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 224 IPR011598 GO:0046983
Cca11g00511 369 Gene3D - 164 244 IPR036638 GO:0046983
Cca11g00511 369 PANTHER TRANSCRIPTION FACTOR BHLH70 18 368 - -
Cca11g00511 369 SMART finulus 179 230 IPR011598 GO:0046983
Cca11g00511 369 Coils Coil 221 241 - -
Cca11g00511 369 Pfam Helix-loop-helix DNA-binding domain 174 225 IPR011598 GO:0046983
Cca11g00511 369 PANTHER MAX DIMERIZATION, MAD 18 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00511 Cca-Chr11 7248529 7251426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00511 35 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.970 6.81e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00511 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00511 - - gmx:100789928 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00511 11 7248529 7251426 Cca11g00511 11 7248529 7251426 ECH