Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00509 ATGGCTCCAATGTTGGAAAGCAACGAGAACGGTGAAGCGAAGCAGGTAAGAAAACACGTGGAAGAGAAGGAAGATGGGATCCTATTTGCCATGGCCATGATGTCTTCCATGGTGTTACCACTTGGGGTTAGAACCGCAGTGGAGCTTGGAATCTTCGACATAATAGCGAAAGCAGGCGAAGGTGCGAAGCTCTCAGCAGAGGATATTGTAAAGCAGATTGGGTCAAAGAACCCGGAAGCAGCCACAATGCTGGATCGGCTTCTGAGTCTATTGGCGAGTCACTCTATGCTCTCTACATCTCTTGCTGAAGGAGAACTAGTGTCTGTGTCTCCTAAGAAGCTCTATGGCCTCACCTTTGCCTCCAAGTATTTTGTCACTGATCACCATGGTGTCTCCTTCGGACCTGCCTTGAACTTGACTCTCGACAGGGTTTTCTTGGAAAGCTGGAGCGAACTGAAAGGTGCCATATTGGAAGGGGGTATACCATTCAACAGGGCTCATGGCATGCACGCATTTGAGTATCCAGCAGTTGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGCTCAGCATTACCACTATTGTCATGAAGAGGATTCTCGAGTTCTACCAAGGTTTCAACAACATTAATAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATTAATCTCAAGCTAATCACTTCTAAATATCCCAATCTTCACGCTGTTAATTTTGACTTGCCTCATGTCATTCAACATGCCCCAACATATCCTGGCGTGGAACATGTAGGAGGAGATATGTTTGTCAGTGTTCCTAACGGAGACGCCATCTTTATGAAGtggatacttcatgattggagtgatgaacactgcttgaagctgttgaagaattgccataaagcaattcctagtgatggaaaAGTGATTGTAGTGGATTCAGTTCTTCCGGCTTTGCCCGAGACTACAACTACTTCCAAGTCTGGTTTTCAATCTGACCTATTGATGATGACTCAAAACCCTGGAGGGAAAGAGCGAACCCAGAATGAATTCATGGACTTGGCACTAGGATCTGGATTCAGTGGTCTCCGATTCGTATCNNNNNNNNNNNAAACCCTGGAGGGAAAGAGAGAACCCAGAATGAATTCATGGAATTGGCATTAG 1143 0.4234 MAPMLESNENGEAKQVRKHVEEKEDGILFAMAMMSSMVLPLGVRTAVELGIFDIIAKAGEGAKLSAEDIVKQIGSKNPEAATMLDRLLSLLASHSMLSTSLAEGELVSVSPKKLYGLTFASKYFVTDHHGVSFGPALNLTLDRVFLESWSELKGAILEGGIPFNRAHGMHAFEYPAVDPRFNDVFNKAMLSITTIVMKRILEFYQGFNNINRLVDVGGGLGINLKLITSKYPNLHAVNFDLPHVIQHAPTYPGVEHVGGDMFVSVPNGDAIFMKWILHDWSDEHCLKLLKNCHKAIPSDGKVIVVDSVLPALPETTTTSKSGFQSDLLMMTQNPGGKERTQNEFMDLALGSGFSGLRFVXXXXXTLEGKREPRMNSWNWH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00509 380 PIRSF O-mtase 7 366 IPR016461 GO:0008168
Cca11g00509 380 Gene3D - 9 124 IPR036388 -
Cca11g00509 380 CDD AdoMet_MTases 212 305 - -
Cca11g00509 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 360 IPR029063 -
Cca11g00509 380 Gene3D Vaccinia Virus protein VP39 126 365 IPR029063 -
Cca11g00509 380 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Cca11g00509 380 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 361 - -
Cca11g00509 380 PANTHER O-METHYLTRANSFERASE 1 361 IPR016461 GO:0008168
Cca11g00509 380 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Cca11g00509 380 Pfam Dimerisation domain 44 92 IPR012967 GO:0046983
Cca11g00509 380 SUPERFAMILY "Winged helix" DNA-binding domain 22 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00509 Cca-Chr11 7218132 7220058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00509 24 359 Monolignol Biosynthesis Gene Families AT5G54160 52.381 5.53e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00509 K13066 - gmx:100789402 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00509 11 7218132 7220058 Cca11g00509 11 7218132 7220058 ECH