Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00508 ATGGAAGCAGAAAAAAGCTTCAACTATGCCATGCAACTGGTGAACTCTAGTGTGCTATCCATGGCCATGCACTCAGCCATAGAGCTTGGCATTTTCGACATCATGGGCAAAGCAGGTGTAGATGCCAAACTATCTGCCAAGGACATTGTAGCTCAACTTCCATGCAAGAATTCAGAAGCAGTCACAATGTTGGATCGTATCCTAAGGCTTTTAGCAAGTCACTCCATCATTGATTGCACAGTAGTTGATGATCAACAGGGTCCTCCTCCACATTTGCAACGCCTCTATGGCATGAACACTGTGTCCAAATACTTTGCTTGCATTGATGCTGCTGGCTCACTAGGTCCTTTGATGGTGTTGACTCAGGACAAGGCCATCCTTCAAAGTTGGTACCAAGGGAAAGATGCAATTCTGGAAGGAGGTATTCCATTCAACAGGGTCCATGGCAAACACTTGTTTGAGTATTCTTACTCGAACTCAAGCTTCAATCAGCTCTTCATGGCTGCAATGACCAACCGTGCGACTTTAATTATGAAAAAGATTGTTGAATCCTACAAAGGGTTTGAGAACACCAAAAGGCTGGTGGACGTTGGAGGTGGCCTTGGGGTCACTCTTAACATAATCACTTCTAAATACCCTCACATTAAGGGCATCAATTTTGACTTGCCTCATGTCATAGAACATGCCTCTCCCTACCCTGGTGTGGAGCATGTGGGAGGAGATATGTTTGAGAGTGTGCCAGAAGGAGATGCCATTTTGATGATGGTGGGAATTAAGTGTGTTGCGATTTTATTTATTTATTtatttttaaatacatgtgagaatcaaacttga 834 0.4257 MEAEKSFNYAMQLVNSSVLSMAMHSAIELGIFDIMGKAGVDAKLSAKDIVAQLPCKNSEAVTMLDRILRLLASHSIIDCTVVDDQQGPPPHLQRLYGMNTVSKYFACIDAAGSLGPLMVLTQDKAILQSWYQGKDAILEGGIPFNRVHGKHLFEYSYSNSSFNQLFMAAMTNRATLIMKKIVESYKGFENTKRLVDVGGGLGVTLNIITSKYPHIKGINFDLPHVIEHASPYPGVEHVGGDMFESVPEGDAILMMVGIKCVAILFIYLFLNTCENQT 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00508 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 255 IPR029063 -
Cca11g00508 277 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 6 254 - -
Cca11g00508 277 Pfam O-methyltransferase domain 130 255 IPR001077 GO:0008171
Cca11g00508 277 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 11 277 IPR016461 GO:0008168
Cca11g00508 277 SUPERFAMILY "Winged helix" DNA-binding domain 3 105 IPR036390 -
Cca11g00508 277 Gene3D - 1 105 IPR036388 -
Cca11g00508 277 Gene3D Vaccinia Virus protein VP39 109 264 IPR029063 -
Cca11g00508 277 PANTHER O-METHYLTRANSFERASE 6 254 IPR016461 GO:0008168
Cca11g00508 277 Pfam Dimerisation domain 21 72 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00508 Cca-Chr11 7205028 7207514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00508 9 254 Monolignol Biosynthesis Gene Families AT5G54160 52.033 6.59e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00508 K13066 - gmx:100788873 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00508 11 7205028 7207514 Cca11g00508 11 7205028 7207514 ECH