Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00501 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAGGAGGAGGAGGAAGAGGAGGCAGCAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTGTTACACCAGCACCAGGATGCGGCAGCTTCCAATTtcatcatcaacaatcatcagcatcaccaGACAACAAATCAGCTAGATTTCATGGACTTGTCACTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCATCAGGAGGTGGTGTTTATGGTCATCATCATGGAAGTGCTACTGCTAGTTCTTCTGCCAATGGTAACAACCTGCAGCAGCAGCCAGCTGAGAAGGAGCACATGTTTGATAAAGTTGTGACACCTAGTGATGTGGGGAAGCTGAACCGTTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCCACCAATGAGAAGGGGCTGCTGCTGAATTTTGAGGACAGGAATGGCAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGTCTAATCATCACCATCACCATCATGGCCCTGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTAATGTCCATCAGATGGGGTGCCACTGCCCATGGCAGATTCTACTCCCTCCCTTCCccaaccccaccacgccaccaccaccatgaccaTTTGCAACAACACCTCAATTATAACACCACCATGTATCATCACCCCTTTGCTGCTTCTGCAAGTGCAAACAATGGATCAACTCATCACTACAACTACCATAATGACATGACTTCAGGATCTGGCTCAGTCTTTTACCTCAGGTCAACACCCCCATCAATGCCTATTTCTGATCACCAAACCTTGGGCACAAGGCAACAACAAGAGGGAGGCAATGCTTCTCTTTCCCCTATGATCATTGATTCTGTTCCGGTTGCTCATAACCATCATCACCATCCCTACCATGGCGCCAAGAGTGGTTCTAGTGCTAGTACTAGTCCTAGCACTGCAGGCAAAAGGCTAAGACTATTTGGGGTGAACATGGAATGTGCTTCTTCAACATCAGAAGATCCCAAATGCTTCAGCCTGTTGTCCTCATCATCTTCGGTGGCACATTCTCCTTCACTGCCACCTCTTCAGCTTTTGAGGGAAGACACTCTCtcatcatcatcatcatcagcaAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAGTACCGGCAGTGA 1398 0.4485 MELMQEVKGYSDSREEEEEEEAAEEIITREESSRLLHQHQDAAASNFIINNHQHHQTTNQLDFMDLSLGSSKDEGNLQGSSGGGVYGHHHGSATASSSANGNNLQQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRSNHHHHHHGPDPSTTLFTPFFLPNQPHLMSIRWGATAHGRFYSLPSPTPPRHHHHDHLQQHLNYNTTMYHHPFAASASANNGSTHHYNYHNDMTSGSGSVFYLRSTPPSMPISDHQTLGTRQQQEGGNASLSPMIIDSVPVAHNHHHHPYHGAKSGSSASTSPSTAGKRLRLFGVNMECASSTSEDPKCFSLLSSSSSVAHSPSLPPLQLLREDTLSSSSSSARFGDQRGEPSMLFDLDPSLQYRQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00501 465 MobiDBLite consensus disorder prediction 430 446 - -
Cca11g00501 465 MobiDBLite consensus disorder prediction 91 109 - -
Cca11g00501 465 MobiDBLite consensus disorder prediction 420 465 - -
Cca11g00501 465 MobiDBLite consensus disorder prediction 66 116 - -
Cca11g00501 465 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 63 431 - -
Cca11g00501 465 CDD B3_DNA 113 202 IPR003340 GO:0003677
Cca11g00501 465 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 431 IPR044800 GO:0003700
Cca11g00501 465 Pfam B3 DNA binding domain 115 219 IPR003340 GO:0003677
Cca11g00501 465 ProSiteProfiles B3 DNA-binding domain profile. 115 220 IPR003340 GO:0003677
Cca11g00501 465 SUPERFAMILY DNA-binding pseudobarrel domain 111 205 IPR015300 -
Cca11g00501 465 SMART B3_2 115 220 IPR003340 GO:0003677
Cca11g00501 465 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g00501 465 MobiDBLite consensus disorder prediction 362 384 - -
Cca11g00501 465 Gene3D - 109 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00501 Cca-Chr11 7031481 7033627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00501 106 401 RAV Transcription Factor Family AT2G46870 47.811 1.26e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca11g00501 B3 1.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00501 - - gmx:100778733 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00501 11 7031481 7033627 Cca11g00501 11 7031481 7033627 ECH