Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00500 ATGGGTAGCCCAGCTTCAATGCCTGTGGGATTCAGATTCCACCCAACTGATGAAGAGCTTGTGGGTCACTACTTAAAGCACAAGTTGCTTGGTAACCATTCCACAGTGCATAATGTCATAGCTGAGATTGATGTATGCAAGTTTGAGCCTTGGGGCTTACCAGCATTTTCCAAGGTAAAATCGGATGATCAAGAATGGTTTTTCTTTAGTCCTCTTGGTTTGAAGTTCACAAAGGACAGAAGGAAGAAGTGTAACAGGAAAACCAAAGCTGGATTCTGGAAGCCAACTGGTAAAGACCGTGAAATTAAGAGCCGAGGCAGCAAAAATGTCATAGGCACTAAGAAGACTTTGGTTTTCTACAAGGGTCGTAGTTCTGATGCTCTCAGGACCAAGTGGGTTATTCATGAATATCATGCAGTTACCTTTCCTCAAGACAAGAGAGATTTTGTCTTGTGTCGCTTAATGAACAAAGCTGAGAAAAAAGCAGAAACGGAAACTGATAAATTGATACATGGTGAAGGGGACTCAAGTAACCATATTGTTGCTGACTTTGAGAACCAAGAAACTGATGATAAAATTCCAAATGTATATACTTTACCAGAAGTGAATCTGGAATCAATCTTTCCAGCACCTCCTCAAGCAGAGGAATATGAATTGCCCTCAATTCAACAATCTACAATTTGCATTGAACAAGAATCATCTTCCCGAGGTTCTTCATTTCCCAGTGCATATATTGGGGAGAAAAACAATACTATGCATATTCAAATGGAAACCATTGAAGAGGAAGACCATCTTGATAATATATATATCGATAAGTTCTTGAATGAAATTTTAGTTGGCGAGGATGCCTTTAACACTAATGAAACTATACCTGCTTTTGGTATAGAAACAATAACTGCTCTGAAGGAGGCATATTATGAAAGCAAAGAAACAGATGGTGAACCACTATCTGCACAGGCACAGAAGGAAACACATACTGGAGTCAAACGAAGAACAGTTAAAAGCTCAGGGAACCGATGCAAGAAAGCATTCGGAAGCACAAGCAATCAATCATCTACTCTAAATGGAAAGAGTTCTTCCAGATACTTGGAGACTCCTTTGCCAGTGAAATTGTTCAAGTATGACAACATTCAAGACACTACTTCATCAGCATTTAGTGAACATAATTGTTCGAAAGAAAACCTGATTATGTCAACAGTTCAAACAATAAATGATTCTGTTAATGCTTGCCCTCCTTCATTGTCATCTAAAAATGAAGTAAACCAAGAGAAAAAGGGCAGTTCTTCTGCCGAGTTCTGGGAACAGGATGCTTATGATGACTTAATTACAAATGAACCTTCCTTTATTCGCTTAATTAGGGCCAGCCCCTCTCCTTCACCTCCAAGAAAATGCCAAAATAAATATTTTCTGACAACTGACATTATGCATCTTTGTGTCACTGAGAGCTGCTCCAGAAAATCTCAAACAAAGAGGAATATTTTAAGCCAAGTATTATCCCAACAAAAGGTACTGAAGAAAACACACACAATAAAGTTAAACCAAGAGCAGAGAAAAGGTCAGGGTACCATTTCAGGAAAGAACTTGGAAACCAAGAACCATCTATCATCTGGGATCATTGGAAAGGGTTCTTTCATTCAGTTGGAGACTCCGTTTGTGCAAAGATCATGGTTTCTCTTCACCTGGAGTTCTGCTTGGTCTTGGCATGGTTTTGATTTTCACCATGACGTGGTGCAAAAGGTGAAACTCAAAGGGGTCTCTTAA 1761 0.393 MGSPASMPVGFRFHPTDEELVGHYLKHKLLGNHSTVHNVIAEIDVCKFEPWGLPAFSKVKSDDQEWFFFSPLGLKFTKDRRKKCNRKTKAGFWKPTGKDREIKSRGSKNVIGTKKTLVFYKGRSSDALRTKWVIHEYHAVTFPQDKRDFVLCRLMNKAEKKAETETDKLIHGEGDSSNHIVADFENQETDDKIPNVYTLPEVNLESIFPAPPQAEEYELPSIQQSTICIEQESSSRGSSFPSAYIGEKNNTMHIQMETIEEEDHLDNIYIDKFLNEILVGEDAFNTNETIPAFGIETITALKEAYYESKETDGEPLSAQAQKETHTGVKRRTVKSSGNRCKKAFGSTSNQSSTLNGKSSSRYLETPLPVKLFKYDNIQDTTSSAFSEHNCSKENLIMSTVQTINDSVNACPPSLSSKNEVNQEKKGSSSAEFWEQDAYDDLITNEPSFIRLIRASPSPSPPRKCQNKYFLTTDIMHLCVTESCSRKSQTKRNILSQVLSQQKVLKKTHTIKLNQEQRKGQGTISGKNLETKNHLSSGIIGKGSFIQLETPFVQRSWFLFTWSSAWSWHGFDFHHDVVQKVKLKGVS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00500 586 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Cca11g00500 586 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Cca11g00500 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 415 - -
Cca11g00500 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 3 415 - -
Cca11g00500 586 MobiDBLite consensus disorder prediction 339 359 - -
Cca11g00500 586 MobiDBLite consensus disorder prediction 312 359 - -
Cca11g00500 586 Pfam No apical meristem (NAM) protein 8 138 IPR003441 GO:0003677|GO:0006355
Cca11g00500 586 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00500 Cca-Chr11 7000200 7005082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00500 3 241 NAC Transcription Factor Family AT5G24590 42.915 7.11e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g00500 NAM 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00500 - - ccaj:109803958 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00500 11 7000200 7005082 Cca11g00500 11 7000200 7005082 ECH