Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00493 ATGACCAACCATCACTTCAAACATTCCATTCTCTCCTCAGTTTTTCTCATGCCATCACCATCTCCTTCCTCTGCATATTCCCTTTACACTTGTTACATGGTTTCCAAGTTAATGGTCTCTATCATAGGACCCTTATTTCTTCTATCCTTGGTTGTTGTTCAAGTCTCATCTTGTGACCAAATTGATAAACTCTCCCTCTTGGCCTTCTCTGGGAACATATCCACCTCTCCACCTTATCCTTCTCTCAATTGGTCTGATTCTCTTGATTGTTGTACTTGGGAAGGCATTACTTGTGATGGAGATCTTAGAGTCACGCATCTTTTGCTACCATCTAGAGGCCTCACTGGCTTCAtctcaccctctctcacaaacctctcttctctctctcaccttaatctctcACATAATAGATTATATGGTAATCTCCAAGACCAGTTTTTCTCATTGCTCAATCACTTGGTAGTTCTTGATTTGAGCTACAATCGTCTTTTTGGTGGATTGCCACCTTTTGTTGTTGATAATAAAAAGAACACAAGTGGTGGTGTTATTCAGGAGCTGGATTTGTCTAGTAACCATTTCAATGGAACACTTCCAAATTCTTTGCTTCAGCACTTGGCAGCTGCTGCAGCTGGAGGGAGTTTGGTGTCTCTGAATGTTAGTAATAACAGCTTCACAGGTCATATTCCCACTTCTCTCTTTTGCATTAATGAGCATAACTCCTCCTCTATCAGATTCTTGGATTATTCCTCCAATGATTTTGATGGTGCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAAAAGTTTAGAGCAGGTTTCAATTTTCTGTCAGGGCCTATCCCAAGTGATATTTTTGATGTTGTTTCTCTCACAGAAATCTCACTGCCCCTCAATAGACTCACTGGAACTATCGGTGATGGCATTGTTAGCCTTACCAATCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTCCATTCCCCTTGATATTGGTAAACTCTCCAAGTTGGAACAGCTTCTCCTTCATGTCAACAATTTGACAGGTACTTTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAACGGCTTGGAGGGAAATCTCTCTGCATTCAATTTCTCACGATTCCTCAGACTTACCACACTTGACCTGGGGAACAATATTTTTACTGGTGTTCTACCACCAACCCTTTATGCATGCAAGTCACTTTCAGCAGTGAGGCTAGCATCTAATCAGCTTGAGGGAGAGATTTCACCCAAGATACTTGAACTAGAGTCCTTGTCTTTCCTATCAATTTCTACTAACAACTTGAGGAATGTCACTGGGGCTCTGACAATACTCAGGGGGCTCAAGAACCTTAGCACCCTTATGCTCTCTAAGAATTTTTTCAATGAAATGATACCACAAGATGTGAACATAATAGAGCCAGATGGATTCCAAAAACTCCAGGTTTTAGGATTTGGAGGTTGTAATTTCACAGGTCAAATACCAGGCTGGCTTGTAAAACTAAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAATTTAGTGGTTCAATTCCTCCTTGGTTGGGTACACTTCCTCAGCTTTTCTACATGGACTTGTCTGTTAACCAGCTTACAGGAGTATTTCCAGTAGAGCTCACAGAACTCCCAGCAATGACATCACAACAGGCAAATGATAAAGTAGAAAGGACTTACCTTGAGTTACCTGTTTTTGCTAATGCAAACAATGTTTCCCTACTGCAATATAATCAGCTTTCAGCCCTACCTCCGGCAATATATCTGGGAAGCAATCACCTTAATGGAAGTATCCCTATTGAGATTGGGAAACTCAAAGTCCTTCATCAGCTTGACCTGAAAAGTAACAACTTCTCTGGCAGTATACCAGTTCAGATTTCAAACTTGACTAACTTAGAAAAGCTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGATTCCCTCAGAAGATTACATTTCTTGTCTTTTTTCAGTGTAGCATTCAATAACCTTCAAGGGCAGATACCTACTGGTAGTCAATTTGATACTTTCTCCTATTCTAGCTTTGAAGGAAATGCACAATTGTGTGGTCAAGTTATTCAGCGTTCTTGTCCTCAACGAAATAGTAGTAGCACCGCAGCTAGTCGCAGTTCAAGCAGAAAAGTAATGATAGTACTTATCATTGGAGTCAGTTTTGGCATTGCTTCACTGATAGTAGTGTTGACACTATGGATACTATCCAAGAGAAGGGTCAATCCAGGAGGAGAGCCTGACAAGATTGAAATGGAATCAATTTCTGCCTACTCCAACAACGGTATTCATCCTGAGGTGGACAAGGAGGCTAGCTTAGTGGTATTGTTTCCCAACAAAAACAATGAAACCAAGGACCTTACCATATTTGAGATCCTAAAAGCCACTGAAAATTTCAGCCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACCACAGTGGCTATCAAGAAACTTTCAGGAGACTTAGGCCTCATGGAGAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAAATGCACAACATGAGAATCTGGTGGCATTGCAAGGCTATTGTGTGCATGATGGATTCCGGCTTCTCATCTATACTTACATGGAAAATGGAAGCCTGGATTACTGGCTGCATGAAAAGCCTGATGGTGCTTCTCAACTTGATTGGCCAACTCGCTTGAAGATTGCACAAGGTGCAAGCTGTGGATTGGCCTACTTGCATCAGATATGTGAACCACACATTGTGCACCGCGATATAAAGTCTAGCAACATACTCCTTAATGGAAAATTTGAGGCACATGTTGCTGATTTTGGGTTGTCCAGATTGATTCTTCCATATCAAACTCATGTTACAACTGAACTTGTTGGAACATTAGGCTACATTCCACCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGAGTTGTCATGCTTGAACTTCTCACTGGGAGAAGGCCTGTGGATGTATGCAAGCCAAAAATGTCAAGGGAGTTGGTTGGATGGGTTCAGCAGATGAGGTGTGAAGGAAAACAAGATCAAGTATTTGCCACTCTTCTGAGAGGGAAGGGGTTTGAAGGAGAGATGCTGAAGGTATTGGATGTTGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAATCATCAGAGAGGTTGTTGAATGGCTGAAGAATGTAGGATCAGACAGCCAGCCAACACAGAAATAA 3312 0.4133 MTNHHFKHSILSSVFLMPSPSPSSAYSLYTCYMVSKLMVSIIGPLFLLSLVVVQVSSCDQIDKLSLLAFSGNISTSPPYPSLNWSDSLDCCTWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLYGNLQDQFFSLLNHLVVLDLSYNRLFGGLPPFVVDNKKNTSGGVIQELDLSSNHFNGTLPNSLLQHLAAAAAGGSLVSLNVSNNSFTGHIPTSLFCINEHNSSSIRFLDYSSNDFDGAIQPGLGACSKLEKFRAGFNFLSGPIPSDIFDVVSLTEISLPLNRLTGTIGDGIVSLTNLTVLELYSNHFTGSIPLDIGKLSKLEQLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNGLEGNLSAFNFSRFLRLTTLDLGNNIFTGVLPPTLYACKSLSAVRLASNQLEGEISPKILELESLSFLSISTNNLRNVTGALTILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPDGFQKLQVLGFGGCNFTGQIPGWLVKLKKLEALDLSFNQFSGSIPPWLGTLPQLFYMDLSVNQLTGVFPVELTELPAMTSQQANDKVERTYLELPVFANANNVSLLQYNQLSALPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLKSNNFSGSIPVQISNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGSQFDTFSYSSFEGNAQLCGQVIQRSCPQRNSSSTAASRSSSRKVMIVLIIGVSFGIASLIVVLTLWILSKRRVNPGGEPDKIEMESISAYSNNGIHPEVDKEASLVVLFPNKNNETKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTVAIKKLSGDLGLMEREFKAEVEALSNAQHENLVALQGYCVHDGFRLLIYTYMENGSLDYWLHEKPDGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLNGKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRCEGKQDQVFATLLRGKGFEGEMLKVLDVACMCVSHNPFKRPIIREVVEWLKNVGSDSQPTQK 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00493 1103 Gene3D Ribonuclease Inhibitor 285 381 IPR032675 -
Cca11g00493 1103 Gene3D Ribonuclease Inhibitor 183 284 IPR032675 -
Cca11g00493 1103 ProSiteProfiles Protein kinase domain profile. 820 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00493 1103 Pfam Leucine rich repeat N-terminal domain 62 99 IPR013210 -
Cca11g00493 1103 Pfam Protein tyrosine and serine/threonine kinase 823 1044 IPR001245 GO:0004672|GO:0006468
Cca11g00493 1103 Gene3D Phosphorylase Kinase; domain 1 785 895 - -
Cca11g00493 1103 SMART serkin_6 820 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00493 1103 PANTHER LEUCINE RICH REPEAT KINASE 2 39 1095 - -
Cca11g00493 1103 SUPERFAMILY L domain-like 103 233 - -
Cca11g00493 1103 Gene3D Ribonuclease Inhibitor 62 182 IPR032675 -
Cca11g00493 1103 PANTHER OS06G0692500 PROTEIN 39 1095 - -
Cca11g00493 1103 PRINTS Leucine-rich repeat signature 515 528 - -
Cca11g00493 1103 PRINTS Leucine-rich repeat signature 645 658 - -
Cca11g00493 1103 Gene3D Transferase(Phosphotransferase) domain 1 896 1103 - -
Cca11g00493 1103 ProSiteProfiles Leucine-rich repeat profile. 647 669 IPR001611 GO:0005515
Cca11g00493 1103 SMART LRR_typ_2 150 174 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 312 335 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 512 536 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 336 360 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 433 456 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 645 669 IPR003591 -
Cca11g00493 1103 SMART LRR_typ_2 125 149 IPR003591 -
Cca11g00493 1103 Pfam Leucine Rich Repeat 647 668 IPR001611 GO:0005515
Cca11g00493 1103 Pfam Leucine Rich Repeat 387 406 IPR001611 GO:0005515
Cca11g00493 1103 SUPERFAMILY L domain-like 591 707 - -
Cca11g00493 1103 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524
Cca11g00493 1103 SUPERFAMILY RNI-like 185 559 - -
Cca11g00493 1103 SUPERFAMILY Protein kinase-like (PK-like) 805 1091 IPR011009 -
Cca11g00493 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Cca11g00493 1103 Gene3D Ribonuclease Inhibitor 382 723 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00493 Cca-Chr11 6885731 6889486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00493 45 751 Miscellaneous Gene Families AT1G17240 50.983 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca11g00493 PK_Tyr_Ser-Thr 7.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00493 - - gmx:100781943 1896.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00493 11 6885731 6889486 Cca11g00493 11 6885731 6889486 ECH