Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00490 ATGGTGTTGGATCCAAAGCTGGTGCTGGTGGTGTTCATCAGCACCTGCATTCTGGCCATCAATGGAGGCACAGATCCAAATGACGTGGCTTCTCTAAAGGGTATGTATCAAAGTATGAACTCGCCAACCCAACTAAATTGGAATGGTGATGATCCTTGTGGACAGTCTTGGCAAGGCATTACTTGCTCTGGCAATCGTGTAACAGAAATTAAGTTACCTGGTCGTACACTAACCGGATCTTTGGGTTACCAGCTAGAACCCATGACATCTGTGACAAACCTAGACCTGAGTAACAACAATCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTAAATCTTGCAAATAATAATTTCAACGGGCAAATCCCTTATTCTCTTTCTGATAAGACTTCTCTTATAGTCCTGAATCTTGGTCACAATCAGCTCCAGCAAGGAATTAATGTTGATTTTCAAAAGCTCTCTTCTCTCAACACATTGGATCTATCGTTCAATTCTTTGTCAGGTGACCTGCCTCAGACTTTGAGCTCACTTTCAAGCATAAGCACCATGAATCTGCAAAGCAACCAATTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGATAATCTGAATGTGGAAAACAATCATTTTACCGGCTGGATACCAGAACAATTGAAAAATATAAACCTACAGAAGGATGGTAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGTAACAACAAGAAACCGAAATCACAAATCTGGCGGCCATACCACATCAGATGGTGACTCAAATGATGGCGGAGACAAAAAATCTGGTATAGGCGGTGGTGGCATTGCTGGAATAGTGATCTCCATCCTGGTTGTTGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGGAGATCCAAAAAGTCATCTAATGATGTTGAAAAGCTTGACAATCAGCCCTTGGCTCCTCATACTTCAAATGACGTGCATGAAATGAATTCCATGCAAACTTCATCGGTTATTGACTTGAAGACATTTGATACAACTTCGGCCCCAATAAGCCTTAAACCTCCACCTTTTGATCGTCACAAATCATTTGATGAAGATGAGTTTTCAAAGCAGCCCCCGGTTGTAGTCAATAGGCCCATTACAGTCAAGAAGACTGTCACAGCTCCTGCAAATGTAAAATCATATTCTATAGCTGACCTACAGATTGCTACTGGAAGCTTCAGTGTGGATCAGCTTCTTGGAGAGGGGTCTTTTGGTCGTGTGTACCGTGCTCAATTTGACAATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGAAGATTTTGTAGAATTAGTTTCAAACATATCCCATTTGCATCATCCGAATGTGACAGAGCTTGCAGGTTATTGTTCAGAGCATGGACAGCATCTACTAGTCTATGAATTTCATAAAAATGGATCACTGCATGACTTCCTTCACCTACTTGATGACTATAGTAAACCATTGATATGGAATTCACGTGTGAAGATTGCTTTGGGGATTGCACGTGCTTTAGAGTACCTCCATGAAGTATGTTCACCATCAGTTGTTCATAAGAATATAAAGTCATCCAACATATTGCTTGATGCAGATCTTAATCCTCATCTTTCCGACAGTGGATTGGCAAACTATATTCCAAATGCAAACCAGGTATTGAACAATAATGCTGGATCCGGATATGAAGCTCCTGAAGTTGGCTTGTCTGGTCATTACACTCTTAAGAGTGATGTCTATAGCTTTGGAGTCGTCATGTTGGAACTTCTCAGTGGACGAAAACCATTTGACAGCTCAAGGCCAAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCTCTATCTCGATTTGCGGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCATTGGTTCGATTAGTACAGCGTACTAACATGAGCAAACGGACGTTTGGAACTGATCAAGGAGGATCCAACCAAGGAGGTGATAACCAAGAAACACAAGACATGTAA 2157 0.4274 MVLDPKLVLVVFISTCILAINGGTDPNDVASLKGMYQSMNSPTQLNWNGDDPCGQSWQGITCSGNRVTEIKLPGRTLTGSLGYQLEPMTSVTNLDLSNNNLGGTIPYQLPPNLQYLNLANNNFNGQIPYSLSDKTSLIVLNLGHNQLQQGINVDFQKLSSLNTLDLSFNSLSGDLPQTLSSLSSISTMNLQSNQFTGTIDVLANLPLDNLNVENNHFTGWIPEQLKNINLQKDGNAWSSGPAPPPPPGTPPVTTRNRNHKSGGHTTSDGDSNDGGDKKSGIGGGGIAGIVISILVVGAIVAFFLVKRRSKKSSNDVEKLDNQPLAPHTSNDVHEMNSMQTSSVIDLKTFDTTSAPISLKPPPFDRHKSFDEDEFSKQPPVVVNRPITVKKTVTAPANVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDNGKVLAVKKIDSSVLPNDLSEDFVELVSNISHLHHPNVTELAGYCSEHGQHLLVYEFHKNGSLHDFLHLLDDYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSSNILLDADLNPHLSDSGLANYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQALVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGGSNQGGDNQETQDM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00490 718 Gene3D Transferase(Phosphotransferase) domain 1 492 707 - -
Cca11g00490 718 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Cca11g00490 718 PANTHER OS01G0253100 PROTEIN 14 715 IPR045271 GO:0004714|GO:0006468
Cca11g00490 718 PRINTS Leucine-rich repeat signature 91 104 - -
Cca11g00490 718 PRINTS Leucine-rich repeat signature 158 171 - -
Cca11g00490 718 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Cca11g00490 718 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cca11g00490 718 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Cca11g00490 718 MobiDBLite consensus disorder prediction 232 278 - -
Cca11g00490 718 SUPERFAMILY Protein kinase-like (PK-like) 391 685 IPR011009 -
Cca11g00490 718 CDD STKc_IRAK 419 688 - -
Cca11g00490 718 Gene3D Phosphorylase Kinase; domain 1 381 490 - -
Cca11g00490 718 MobiDBLite consensus disorder prediction 312 336 - -
Cca11g00490 718 MobiDBLite consensus disorder prediction 261 275 - -
Cca11g00490 718 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 14 715 - -
Cca11g00490 718 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00490 718 MobiDBLite consensus disorder prediction 355 374 - -
Cca11g00490 718 Gene3D Ribonuclease Inhibitor 137 238 IPR032675 -
Cca11g00490 718 SUPERFAMILY L domain-like 43 227 - -
Cca11g00490 718 Pfam Leucine rich repeat 111 171 IPR001611 GO:0005515
Cca11g00490 718 MobiDBLite consensus disorder prediction 696 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00490 Cca-Chr11 6822442 6830681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00490 8 717 Strubbelig Receptor Gene Family AT1G53730 63.562 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca11g00490 PK_Tyr_Ser-Thr 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00490 - - gmx:100780323 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00490 11 6822442 6830681 Cca11g00490 11 6822442 6830681 ECH