Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00487 ATGGCTTCTATTCTCACCTTCCTCACAGCCATTGCTTTTGTGGCTCAATCATTTCAAAACTACATGATCCAGAGGCTGCACACACTGTACAAGCATTATGGATATGCTGGTGCAGTGAAGGAAAATGAAGAGCATGAGAGTGATTATTATTGTTCAGTGTGTCTAAGCCAAATTTGTAAAGGGGAAAAGGTTAGGTCTCTTCCAGTATGCAAGCACAGATATCATGTTGATTGTATTGGTGCTTGGTTGAAGAACCATACCACATGCCCTCTTTGTAGGAACAAAATCACTGACCAGAAACATAGACAGGTGAAGAATTTAGGAGAATCAATGTTTAATCTAATGCAGAGTTTCTCTGATCTTTTGGTATCTCTTCTCTACATCATTCTTCCATCTAGCATCACCCAGAATTTCCCTTTGGTTCGTTGA 429 0.3986 MASILTFLTAIAFVAQSFQNYMIQRLHTLYKHYGYAGAVKENEEHESDYYCSVCLSQICKGEKVRSLPVCKHRYHVDCIGAWLKNHTTCPLCRNKITDQKHRQVKNLGESMFNLMQSFSDLLVSLLYIILPSSITQNFPLVR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00487 142 SUPERFAMILY RING/U-box 40 100 - -
Cca11g00487 142 CDD RING-H2_PA-TM-RING 51 93 - -
Cca11g00487 142 Pfam Ring finger domain 51 93 IPR001841 -
Cca11g00487 142 ProSiteProfiles Zinc finger RING-type profile. 51 93 IPR001841 -
Cca11g00487 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 99 IPR013083 -
Cca11g00487 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 32 100 - -
Cca11g00487 142 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 100 IPR044675 -
Cca11g00487 142 SMART ring_2 51 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00487 Cca-Chr11 6781728 6782337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00487 51 96 C3H Transcription Factor Family AT1G53820 56.522 1.87e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00487 - - gmx:100500375 241.891