Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00485 ATGTCACGGCGAGGTACTGCAGAAGAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATTTATCGAGCTATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAGGCGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCGCATTTTCGTTAA 468 0.4103 MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00485 155 Pfam Ribosomal protein S7p/S5e 1 149 IPR023798 -
Cca11g00485 155 ProSitePatterns Ribosomal protein S7 signature. 20 46 IPR020606 GO:0003723|GO:0003735|GO:0006412
Cca11g00485 155 PANTHER RIBOSOMAL PROTEIN S7 1 155 IPR000235 GO:0006412
Cca11g00485 155 CDD uS7_Chloroplast 10 154 - -
Cca11g00485 155 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 155 IPR000235 GO:0006412
Cca11g00485 155 Hamap 30S ribosomal protein S7 [rpsG]. 1 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
Cca11g00485 155 TIGRFAM rpsG_bact: ribosomal protein uS7 3 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
Cca11g00485 155 PANTHER 30S RIBOSOMAL PROTEIN S7, CHLOROPLASTIC 1 155 - -
Cca11g00485 155 SUPERFAMILY Ribosomal protein S7 2 149 IPR036823 -
Cca11g00485 155 Gene3D Ribosomal protein S7 domain 1 155 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00485 Cca-Chr11 6771418 6771885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00485 22 149 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 35.252 1.87e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00485 K02992 - atr:2546561 302.367