Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00484 ATGAAGAAGATTTGGCTCAGCATGTTCTATTCGATACGGGTAGGAGAAGAACCCGACTCTATTTTCTTAAAAAAAAAAATAGAGAAATCAGAACCAAGTCAAGATGATACGGATCAACCCCTCCTCTTGCGTTCGTGCGCCAAAGATCTTACCATTTCCAAAGTAACTGGAGTTACATCTATTTTTCCATTTCAATTCAAGAGTTCTTATGTGTTTCCATGCCCCTTCGAGACCCCGAAAAATGGACAAATTGCTTTTCTTAGGAACACATACAAGATTCGTTACCACAAAAAGGATAATGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGAAGACCCACCAACGCACGAAAGTCGGGATCTTTCAGAAAATGGATTCCTATTCGAAGGGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGTATTTTCCTTAGGAGTAAGGGTGACTTATCTGTCAACTTTTCCACCATTACACCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGAGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 741 0.413 MKKIWLSMFYSIRVGEEPDSIFLKKKIEKSEPSQDDTDQPLLLRSCAKDLTISKVTGVTSIFPFQFKSSYVFPCPFETPKNGQIAFLRNTYKIRYHKKDNDIPSTQHRSSKGSRRPTNARKSGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLRSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00484 246 ProSitePatterns Ribosomal protein S12 signature. 171 178 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 Pfam Ribosomal protein S12/S23 163 241 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 PRINTS Ribosomal protein S12 signature 238 246 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 PRINTS Ribosomal protein S12 signature 170 185 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 PRINTS Ribosomal protein S12 signature 222 238 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 PRINTS Ribosomal protein S12 signature 205 222 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 PRINTS Ribosomal protein S12 signature 186 205 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 CDD Ribosomal_S12 167 238 IPR005679 GO:0003735|GO:0006412|GO:0015935
Cca11g00484 246 PANTHER 30S RIBOSOMAL PROTEIN S12-B 155 245 - -
Cca11g00484 246 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 155 245 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca11g00484 246 SUPERFAMILY Nucleic acid-binding proteins 163 243 IPR012340 -
Cca11g00484 246 Gene3D - 134 245 IPR012340 -
Cca11g00484 246 TIGRFAM rpsL_bact: ribosomal protein uS12 161 243 IPR005679 GO:0003735|GO:0006412|GO:0015935
Cca11g00484 246 MobiDBLite consensus disorder prediction 98 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00484 168 227 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 4.76e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00484 K02950 - psom:113278775 176.792