Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00483 ATGGGTGCTACATCAGGGTCGGGTGCTGCCGCATTGAGTGATTCTGACACATTTGAGATAACTGGGAAGATCATGGTGGTGGCCATAATATTCCTCTTCATGGTGGTTATCTTTGTTCTTGTGCTCCATATCTACGCCAAGTGGTTTTGGTGGAGCATGGAGGAAAAcgccacccctcagccccgcccccgccgccggcggcggcggcgGTTTGTCTTCGCCCCCGGCCAAGACTCGGTGATCTATGAAACTCACCAAGTTGGGCTTGACCCTTCAGTTCTAAGGTCCTTGCCGGTGTTGGTGTTCCAACCTGAGGACTTCAAAGATGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAAACTAGACTTTTGCCTAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCACTCACACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGCTTTTGAATCCTCCAAAAGTTCTCACATTGAAGACAATCGTGTCTCAGGGAACGGTGACTCATCATCACATGAAGATAATTCAGCTGCTGTGAGTGGTTTAGAGTCTTCAAATTTTCCCACTAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTTTGGGGTTTCCTTGGAAGAAGGGACTTCTCACTCTGAGCAACCACCTTGTTCTCCACAATCTACACCATCTTCTTCTAATGGTAGGTGTCATGGAATGTTGGTGATTGATATTCCAAATGAGTGCACTTCCTCCTCTTTGTCCCCTTCTGGGAGTAGGTGTGCTGAAGATGAGGCTAAATCACCGATGGCCGCTACATTGAGGTCATTTAAGAGGCTTTTGAGCAGAGACAAAAAGTTGAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCTCACAGCTAG 924 0.4361 MGATSGSGAAALSDSDTFEITGKIMVVAIIFLFMVVIFVLVLHIYAKWFWWSMEENATPQPRPRRRRRRRFVFAPGQDSVIYETHQVGLDPSVLRSLPVLVFQPEDFKDGLECAVCLSEIVQGEKTRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKSSHIEDNRVSGNGDSSSHEDNSAAVSGLESSNFPTNVLVWGNHTQVSSFGVSLEEGTSHSEQPPCSPQSTPSSSNGRCHGMLVIDIPNECTSSSLSPSGSRCAEDEAKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAHS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00483 307 MobiDBLite consensus disorder prediction 215 241 - -
Cca11g00483 307 MobiDBLite consensus disorder prediction 254 274 - -
Cca11g00483 307 PANTHER RING-H2 FINGER PROTEIN ATL3 10 303 - -
Cca11g00483 307 MobiDBLite consensus disorder prediction 215 242 - -
Cca11g00483 307 SMART ring_2 113 154 IPR001841 -
Cca11g00483 307 Pfam Ring finger domain 112 155 IPR001841 -
Cca11g00483 307 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cca11g00483 307 CDD RING-H2_EL5_like 112 155 - -
Cca11g00483 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 164 IPR013083 -
Cca11g00483 307 SUPERFAMILY RING/U-box 93 161 - -
Cca11g00483 307 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 303 IPR044675 -
Cca11g00483 307 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00483 Cca-Chr11 6758221 6759622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00483 1 290 C3H Transcription Factor Family AT1G53820 41.801 4.08e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00483 - - gmx:100775523 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00483 11 6758221 6759622 Cca11g00483 11 6758221 6759622 ECH