Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00478 ATGTCCAACCTAAAACAACCCTACATCGGAATCTCCGATGCCGCCAACCACaacaacaagaagaagaagaagaagCTCTTCCTCTCCCTCTTCGCCGCCCTCCTGGTGGCAGCCTCCGTGGCAGCCATCGTGGCCGGAGTCAAAAACAAAACCTCCTCAAACTCAAAGTCCAACTCCGACACCCCTCTCAGCCTCTCCCACCACTCCCACGCGCTGATAAAAAGCGCGTGCAGCTCCACATTGTACCCGGAACTCTGCGTCTCGGCCATCGCCTCAGAAAGCAACGTGACGCACAAAGTAAGAAGCCAGCGTGACGTCATCCAGCTCTCCCTCAACATCACCACGCGTGCCGTGGAGCACAACTACTTCACCGTGAAGAGGCTCCTGGCCAAACACGCCCTTACCAAACGCGAGAAAACCGCTCTCCACGATTGCCTGGAGACCATAGACGAAACCCTGGACGAACTGAAACAAGCGGAGCAAGACCTGCAACTGTACCCCAACAAGAAAAGCCTCTACCAACACGCCGACGACTTGAAGACCCTTATCAGCGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACCAGGACGCCGACAAGCGCGTAAGGAAGAAGCTCGAGGAGGGGCAGGTGCACGTGGAGCGCATGTGCAGCAACGCCCTCGCCATGACCAAGAACATGACCGACAACGACATCGCCAACTACGAGTACAACATGCGCCTCAAGCCCAACAACAGGAACTTGGCCCAAACTAGCCATCATCATGTCCACTGGCCCCACTGGATTTCGCCCGCCGACAGGAGGCTCCTGCAGGCCGCCTCCGTCAAGGCCGACGTCGTGGTGGCGGCCGACGGCAGCGGCGACTTTAAGACGGTGACTGCGGCGGTGGATTCCGCTCCGCTTAAGAGTAGCAAGAGGTATGTTATACGGATAAAGGCTGGGGTGTATAGAGAAAACGTGGAGGTGCCTAAGAAGAAGACCAATATCATGTTCTTGGGTGATGGAAGAACCAACACTATCATCACTGCTAATAGAAATGTTGTGGATGGTAGCACCACTTTCCACTCTGCCACTGTCGCTGTGGTGGGTGGCAACTTCTTGGCCCGGGACATAACATTCCAAAACACAGCGGGCCCATCAAAGCACCAAGCAGTGGCCCTAAGGGTGGGTGGGGACCTCTCAGCCTTCTACAACTGCGACATCTTAGCATACCAAGATACCCTCTACGTCCACAACAACCGCCAATTCTTCGTTAACTGCCTCATCGCAGGAACAGTGGACTTCATCTTCGGGAACTCCGCAGTTGTCTTCCAAAACTGCGACATCCATGCAAGACGTCCTGACTCGGGGCAAAAGAACATGGTCACAGCACAAGGAAGGGTGGACCCTAACCAGAACACTGGCATTGTGATCCAGAAGTGTAGGATCGGTGCCACCCAGGACTTGGAGCCTGTGAAGAAGAGTTTCCCCACATACCTTGGGAGGCCTTGGAAGGAGTATTCCAGGACTGTCATCATGCAGAGTAGCATCAGCGATGTCATTCAGCCTGTGGGCTGGCATGAGTGGAGTGGCAACTTTGCTTTGAGCACTTTGGTCTATAGGGAGTATCAGAATACTGGGCCTGGAGCTGGCACTTCTGGGAGGGTTTCTTGGAAAGGCTTTAAGGTTATCACGGATGCTGCTGAGGCCCGGGCTTTTACTCCTGGGAATTTCATTGCGGGCTCCAGCTGGTTGGGCTCCACGGGCTTTCCTTTCTCTCTTGGCTTGTAA 1782 0.5438 MSNLKQPYIGISDAANHNNKKKKKKLFLSLFAALLVAASVAAIVAGVKNKTSSNSKSNSDTPLSLSHHSHALIKSACSSTLYPELCVSAIASESNVTHKVRSQRDVIQLSLNITTRAVEHNYFTVKRLLAKHALTKREKTALHDCLETIDETLDELKQAEQDLQLYPNKKSLYQHADDLKTLISAAITNQVTCLDGFSHQDADKRVRKKLEEGQVHVERMCSNALAMTKNMTDNDIANYEYNMRLKPNNRNLAQTSHHHVHWPHWISPADRRLLQAASVKADVVVAADGSGDFKTVTAAVDSAPLKSSKRYVIRIKAGVYRENVEVPKKKTNIMFLGDGRTNTIITANRNVVDGSTTFHSATVAVVGGNFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATQDLEPVKKSFPTYLGRPWKEYSRTVIMQSSISDVIQPVGWHEWSGNFALSTLVYREYQNTGPGAGTSGRVSWKGFKVITDAAEARAFTPGNFIAGSSWLGSTGFPFSLGL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00478 593 Gene3D - 276 593 IPR012334 -
Cca11g00478 593 ProSitePatterns Pectinesterase signature 1. 307 326 IPR018040 -
Cca11g00478 593 PANTHER PECTINESTERASE 21 592 - -
Cca11g00478 593 Pfam Pectinesterase 282 578 IPR000070 GO:0030599|GO:0042545
Cca11g00478 593 Coils Coil 142 169 - -
Cca11g00478 593 SUPERFAMILY Pectin lyase-like 279 592 IPR011050 -
Cca11g00478 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 232 IPR035513 -
Cca11g00478 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 231 IPR006501 GO:0004857
Cca11g00478 593 Pfam Plant invertase/pectin methylesterase inhibitor 72 227 IPR006501 GO:0004857
Cca11g00478 593 PANTHER PECTINESTERASE 21 592 - -
Cca11g00478 593 CDD PMEI-like_3 75 232 - -
Cca11g00478 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 233 IPR035513 -
Cca11g00478 593 SMART PMEI_2 68 227 IPR006501 GO:0004857
Cca11g00478 593 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00478 Cca-Chr11 6691679 6697101 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00478 18 593 Carbohydrate Esterase AT3G14310 69.712 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00478 K01051 - pvu:PHAVU_010G123100g 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00478 11 6691679 6697101 Cca11g00478 11 6691679 6697101 ECH