Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00476 ATGGATACGATCAAGTCATTCAAGGGGTACGGCAAAGTAGACGAGTTGGAGCAGCAAGCCTATGAGAAGAAGACACGTAAGCGCCTCATAATCATAACCGCCTCCTCAATCGTGCTAATTGCGGTGATCATCGCCGCGGTTGCAGGGGTCGTCATACACACGCGCAACACCAAATCATCCTCCTCATCCGACTCGGCCCCGCAAACCGAGTTGTCCCCGGCCGCGTCACTCAAAGCGGTGTGCGAGGTCACTCAGTACCCGAACTCGTGCGTCTCCGCCATCTCCGCTCTGCCGGAGTCCAACACCACCAACCCGGAGCTCCTCTTCAAGCTCTCGCTCCGCGTCGCCATTGACGAGCTTTCCAAGCTCTCCAGCTTCCCTTCCAAGCTTCGCGCCAATGCCAGCCACGACGCGCGCCTCCAGAAGGCAATCCACGTCTGCGACTCCGTCATCGCCGACGCGCTCGACCGCCTCAACGACTCGGTTTCCTCCCTTGCCGGCGCCAGCGCCGGCAAGGTCATTCCTCCGGCCAGAGTCAGCGACGTCGAGACGTGGCTCAGCGCCGCGCTCACGGACCAGGACACGTGCCTCGACGCGCTCCGCGAGCTCAACTCCACCGCCGCGCACGCCGCGCTGCGCGAGATCGGAGCCGCCATGAAGAACTCCACGGAGCTCGCGAGTAACAGTTTGGCCATCGTGACGAGGATCCTAGGGTTGCTGTCGCGGTTCGGCGCGCCGGTTCACCGGCGGAGGCTGCTAGGGTTTCCGGAGTGGATcggcgcggcggagcggaggctgctggagagcaacgcaacgacgacggcgccggatgcggtggtggcgtcggacggtagcggACAGTTCAAGACTATCGCGGAGGCGCTGAAGCTGGTGAAGAAGAAGAGCGAGAAGAGGTTCGTGGTGTACGTGAAGGCAGGGCGTTATGTGGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTACGGCGATGGCAAGGACAAAACCATCGTCCTCGGTGGCCGCAACTTCTTCGACGGCACGCCCACTTTCGAAACCGCCACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAGACATAGGGTTTGTAAACACTGCCGGTGCATCCAAGCACCAAGCTGTGGCATTAAGATCTGGCTCGGATCGCTCTGTGTTCTACAGATGCTCATTTGATGGCTTCCAGGATACCCTCTATGCCCATTCCAACCGCCAATTCTACCGTGAGTGTGACATCACAGGCACCATAGACTTCATCTTTGGCAATGCTGCTGCTGTGTTCCAAAATTGCAAAATCATGCCCAGACAGCCTCTGCCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCTTAACCAGAACACTGGAATCATAATCCAGAAATCAACAATCACTCCCTTTGGTAACAATCTCACAGCTCCCACGTACCTTGGTAGGCCATGGAAAGATTACTCCACCACTGTCTTCATGCAATCTGATATTGGGTCATTTTTGAAGCCAGTGGGGTGGATGAGTTGGGTCCCCAATGTGGATCCTGCAAGTACCATATTTTATGCCGAATACCAGAATACTGGGCCTGGAGCAGACGTGTCCCAGAGGGTCAAATGGGCCGGGTATAAGCCCACTCTCACGGATGCTGAGGCAGGGAAGTTCACTGTGCAGTCCTTTATCCAGGGCCCTGAGTGGTTACCCAATGCTGCAGTGCAGTTTGAGTCTACCTTGTGA 1758 0.5336 MDTIKSFKGYGKVDELEQQAYEKKTRKRLIIITASSIVLIAVIIAAVAGVVIHTRNTKSSSSSDSAPQTELSPAASLKAVCEVTQYPNSCVSAISALPESNTTNPELLFKLSLRVAIDELSKLSSFPSKLRANASHDARLQKAIHVCDSVIADALDRLNDSVSSLAGASAGKVIPPARVSDVETWLSAALTDQDTCLDALRELNSTAAHAALREIGAAMKNSTELASNSLAIVTRILGLLSRFGAPVHRRRLLGFPEWIGAAERRLLESNATTTAPDAVVASDGSGQFKTIAEALKLVKKKSEKRFVVYVKAGRYVENIDLDKNTWNVMIYGDGKDKTIVLGGRNFFDGTPTFETATFAVKGKGFIAKDIGFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAAVFQNCKIMPRQPLPNQFNTITAQGKKDLNQNTGIIIQKSTITPFGNNLTAPTYLGRPWKDYSTTVFMQSDIGSFLKPVGWMSWVPNVDPASTIFYAEYQNTGPGADVSQRVKWAGYKPTLTDAEAGKFTVQSFIQGPEWLPNAAVQFESTL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00476 585 PANTHER PECTINESTERASE 8 582 - -
Cca11g00476 585 PANTHER PECTINESTERASE 1-RELATED 8 582 - -
Cca11g00476 585 Pfam Pectinesterase 277 570 IPR000070 GO:0030599|GO:0042545
Cca11g00476 585 SUPERFAMILY Pectin lyase-like 272 582 IPR011050 -
Cca11g00476 585 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Cca11g00476 585 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Cca11g00476 585 Gene3D - 271 585 IPR012334 -
Cca11g00476 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 237 IPR035513 -
Cca11g00476 585 SMART PMEI_2 72 232 IPR006501 GO:0004857
Cca11g00476 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 237 IPR035513 -
Cca11g00476 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 234 IPR006501 GO:0004857
Cca11g00476 585 CDD PMEI-like_3 79 236 - -
Cca11g00476 585 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00476 Cca-Chr11 6653191 6656886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00476 1 579 Carbohydrate Esterase AT1G53840 58.277 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00476 - - gmx:100784642 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00476 11 6653191 6656886 Cca11g00476 11 6653191 6656886 ECH