Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00467 ATGGCTTCATGTGGAGCAACAACGTTAACGTCAAGAAAAAAGAGGCGAAACACGGAGATAAAGGAAGTGAAACAGAAAAACAGACGTAACGTGACCTTCACCAAACGCAAACAAGGGCTATTCCACAAGCTCACTGAGCTCTCTCTTCTTTGTAACGTGGAAACCGCTTTGATCATCACAAACACAACCAAAAAAGGAAAGCTCTACTCCGGCGGCTACCCTGACGCCGACGCCGTCCTCCACCGCTATCTCGCCGGAGGGCCACCGCAGAGAATGAACCGTGCATGCACAACGGAACAGGAAGAGACGGTCGAAACCCTAAGGGTGGAGTATGAAGCAGTTCAAAACCAATTGAAAGAAGATAGAAATCGTCTTCAAGCAATGGTGGAGTCACAGAGTCATCACTCTAACCCTTGGTGGGATCTCCCCATTGAGGACATGAGTTTGGATAATCTTCAACACTTCAAGACCTCTTTGGAGAATTTGAAGTTTAACCTAGTTGCTGCTGTGCAGGGGAAACCGTTAACTTCTTCAGTTCCACCAATGCCATCTTCTATGGTTTGCCCAATGCCATATACCACAGTTCCACCACAACAGTGGTGTTAG 606 0.4736 MASCGATTLTSRKKRRNTEIKEVKQKNRRNVTFTKRKQGLFHKLTELSLLCNVETALIITNTTKKGKLYSGGYPDADAVLHRYLAGGPPQRMNRACTTEQEETVETLRVEYEAVQNQLKEDRNRLQAMVESQSHHSNPWWDLPIEDMSLDNLQHFKTSLENLKFNLVAAVQGKPLTSSVPPMPSSMVCPMPYTTVPPQQWC 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00467 201 PANTHER MADS BOX PROTEIN 8 183 - -
Cca11g00467 201 SMART madsneu2 13 74 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 SUPERFAMILY SRF-like 15 100 IPR036879 GO:0003677|GO:0046983
Cca11g00467 201 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 Coils Coil 97 131 - -
Cca11g00467 201 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Cca11g00467 201 Gene3D - 25 108 IPR036879 GO:0003677|GO:0046983
Cca11g00467 201 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00467 Cca-Chr11 6478161 6478766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00467 12 180 Type I MADS-box Gene Family AT5G60440 30.508 1.15e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca11g00467 SRF-TF 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00467 - - gsj:114418701 215.312