Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00465 ATGTTTCCGTTTCATCCTCAAGGAGCTCCGAAACACACTTGCACTCTTCTCGCTGTGACATGTGGCGCAAGTTTCGCCGAGCACAAGTCCTCGCAGAATCAGCGCAACTATCCTTTCCCCGAGTTAGTTTCCGCGGGTCGTCTTGAGGTTCAAACTCTACGTAATCCGGATAAGGAGCAGTTTAGGAAAGTTCTGGAGTCGTATCAACCGAATTTTGTTTACTTGCAAGGAGAGTTGCTAGAAAATGGCGAAGTTGGTTCGCTGGTTTGGCAAGGTGTGGAATTATCCACTTGTGAAGCTGTAACGGAGCTCTTTGGTTCCACGTTGCCGACGGCTGTTTATTTAGAATTACCAACTGGAGAAAGTTATGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATTCCTTTTCTTGTTATGCTGCCTGCCATTTTCTTCAAGCATTTCTTTCAGTAGTACAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAGCTTTACTGTGTCCAAAACAATCAAGTGCTTCCTACTGACAGCATTGATGCTAATAGTGAGATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCAATGTTGATCCTCCAGAGATGGATGATGAGGATGATGAGGAAAGCTCCTCAGGTAGTCTGCCCGCCATAAAGATACATGAAGATGAAGTGAACTTGAGACTTCTCGTCTGTGGTGAACCTTCAACTGTTGACGAGTCATTGCTGAGGTCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAACTCCATGGCAAGTTTAGTGCCCCACCACCTCCTCTTCAGGCAGCCACTTTTTCCCGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCCGGCAATGCACAGACTTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCTTGCACAACTCAACAATGATGGAAACAAACAAAACATCTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCATCTGTATTTGAAATTTGCACGAAGCTTCCTCAGTGGGCTTTGCAGATTTTGAGACAGCTAGCCCCTGAGGTTTCTTTTCGAAGTTTAGTTGCACTTGGCATTGCGAGTATTCAGGGGTTGCCAATAGCTTCTTTTGAGAAAGGAGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCTGTGAGAAAGATAGTACAAACAAAAATAATTTAATTTTTAGCAGTCCCCCTGGTTGGTTGAAACCACCACCTCTTACAAGAAAAAGATGTGAACCAAGCCAAGGGGCTAGTCCTGGTCTTCTTGAAGGTGTCTTTCTAGGGCAGGGTACTGTTTGTAAAGGAAAAAAAGAGGAGAAGGATAGAAAAATGGTGAATGGGAGTAGCACACCATTGACTCCTGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGTCGCCCCAGAATGACTCCTTTTAGTGGACCTTCTGAGATAGATGGTTTTGATGGTGCCCAAGTAGAGGCTAATTTGCCACTTGTTGCCCCTCCAAAGCGTAGCAGTATTGGTTCAACTTCTGCAACACACAGAAAATCATTTTCAAGTGCAGCTCAGTCTAAGCAGGTTATTTCATTGAATCCGCTGCCTCTTAAGAAACATGGTTGCGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTCAAAGATGTAATGGAGTTTCTGATTCTCCGGGGACATAATCGACTGATTCCTCAAGGAGGGCTTACTGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATATTCTCAAAGATGCGCAATTACACTACAACAAATAGAATGACCGGTGTTGGAAACACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACGGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAGAAACAAAATATTGCTAACGGGTATTCTCAAGGGTCCATGTCTTCACGACCCCTTTGA 2346 0.4378 MFPFHPQGAPKHTCTLLAVTCGASFAEHKSSQNQRNYPFPELVSAGRLEVQTLRNPDKEQFRKVLESYQPNFVYLQGELLENGEVGSLVWQGVELSTCEAVTELFGSTLPTAVYLELPTGESYAEALHLKGIPYVIFWKNSFSCYAACHFLQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPTDSIDANSEMGPHLLGDCLKINVDPPEMDDEDDEESSSGSLPAIKIHEDEVNLRLLVCGEPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGNAQTCFNDQLLENHIKNEIIEKSQLVLAQLNNDGNKQNISEPRRSASIACGASVFEICTKLPQWALQILRQLAPEVSFRSLVALGIASIQGLPIASFEKGDAERLLFFYQSCEKDSTNKNNLIFSSPPGWLKPPPLTRKRCEPSQGASPGLLEGVFLGQGTVCKGKKEEKDRKMVNGSSTPLTPARQRLKVSAMRPIPHIRRPRMTPFSGPSEIDGFDGAQVEANLPLVAPPKRSSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNIANGYSQGSMSSRPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00465 781 Gene3D - 593 698 IPR036431 GO:0003677
Cca11g00465 781 SMART ARID_2 592 695 - -
Cca11g00465 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
Cca11g00465 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Cca11g00465 781 CDD ARID 597 695 - -
Cca11g00465 781 MobiDBLite consensus disorder prediction 552 568 - -
Cca11g00465 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Cca11g00465 781 SMART bright_3 596 700 IPR001606 GO:0003677
Cca11g00465 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Cca11g00465 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 IPR042293 -
Cca11g00465 781 MobiDBLite consensus disorder prediction 548 568 - -
Cca11g00465 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Cca11g00465 781 CDD PHD_ARID4_like 705 756 - -
Cca11g00465 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00465 Cca-Chr11 6454414 6463042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00465 4 770 ARID Transcription Factor Family AT3G43240 60.982 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca11g00465 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00465 - - gmx:100816540 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00465 11 6454414 6463042 Cca11g00465 11 6454414 6463042 ECH