Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00463 ATGGAGGGAGCTTCTTCATCTATGACATTGCCCTCTACTTCTGAAGATCATCTTTTAGTTGATGATTTCTACTTTTCAGCCCTTTACGATGCTGAAGAAATATTTCCAATTTCAGATGAGAAATATGCAGAAGAGATACAACTACAAGAAGCCTTGTATTCCTCTGTATTGCCAAGTACTAGAGTTGAAAAAGAAGTTATCCTAATCGATTTAGAAGTtgacagtgacactgacactgacactgacacCCTTTTGAGATCATTCAAAGGGAAACTGAAAGAGACTGGTGAATCTTCTCTGGTCTATTGTGGTATTTGCATGGATGCCAAAACTAGGGAAGAAATGTTCAGGAACCAAAACTGTTCACACTCCTTTTGTGATGATTGTATTGGCAAATATGTGGCTGCAAAGATTCAAGAGAATATATCAACTGTGCAGTGTCCTGACCCCAAGTGCAAGGGCGTTGTAGAGCCACAGTACTGTCGTTCAATCATCCCTAAGGAAGTGATAGATAGATGGGAAAATGCCCTTTGTGAGAATTTTTTCCTTGGATCAGAAAAGTTTTATTGTCCTTTTAAGGATTGCTCAGCTATGTTGATATCTGATGCTGAGGAAATTGTGACTGTTTCGGAATGTCCACATTGTAATAGGCTGTTTTGTGCACGGTGCAAGGTTTCATGGCATTCAGGAATAGAGTGTGGAGAGTTTCAGAATTTGAAGCAGTATGAAAGCGGAAGGGAAGATCTAATGGTTATGGAACTTGCTAAGAATAAAAGTTGGAGAAGATGTTCAAAATGCAAGTTCTATGTCGAAAAAGCTGATGGATGTTCACATATTACTTGCAGATGTGGTAACCACTTTTGCTATGCCTGTGGATCCTCTTGGAATTCGAATCATGCATGTGGGCTTCCTTAA 915 0.3792 MEGASSSMTLPSTSEDHLLVDDFYFSALYDAEEIFPISDEKYAEEIQLQEALYSSVLPSTRVEKEVILIDLEVDSDTDTDTDTLLRSFKGKLKETGESSLVYCGICMDAKTREEMFRNQNCSHSFCDDCIGKYVAAKIQENISTVQCPDPKCKGVVEPQYCRSIIPKEVIDRWENALCENFFLGSEKFYCPFKDCSAMLISDAEEIVTVSECPHCNRLFCARCKVSWHSGIECGEFQNLKQYESGREDLMVMELAKNKSWRRCSKCKFYVEKADGCSHITCRCGNHFCYACGSSWNSNHACGLP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00463 304 ProSitePatterns Zinc finger RING-type signature. 121 130 IPR017907 -
Cca11g00463 304 ProSiteProfiles Zinc finger RING-type profile. 103 151 IPR001841 -
Cca11g00463 304 SUPERFAMILY RING/U-box 183 238 - -
Cca11g00463 304 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 301 IPR031127 GO:0004842|GO:0016567
Cca11g00463 304 SMART ibrneu5 171 233 IPR002867 -
Cca11g00463 304 SMART ibrneu5 240 301 IPR002867 -
Cca11g00463 304 Gene3D - 231 303 - -
Cca11g00463 304 Pfam IBR domain, a half RING-finger domain 174 233 IPR002867 -
Cca11g00463 304 Pfam IBR domain, a half RING-finger domain 254 301 IPR002867 -
Cca11g00463 304 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 301 - -
Cca11g00463 304 SUPERFAMILY RING/U-box 97 180 - -
Cca11g00463 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 181 IPR013083 -
Cca11g00463 304 ProSiteProfiles TRIAD supradomain profile. 99 304 IPR044066 -
Cca11g00463 304 SUPERFAMILY RING/U-box 247 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00463 Cca-Chr11 6446312 6447442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00463 96 293 C3H Transcription Factor Family AT2G19610 29.048 4.89e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00463 K11975 - gmx:100815626 461.84