Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00461 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCTGCGGGCCGCTCCCGCCGCGTCACCGCCGATATCCTGTGGCCAAATTTGAGGAACGGGAAGCGGTTCTCGAAGCCGGTGCTGGACGATGACTTCGAGGCTGGCTTCAGAGACTTCAAGGATGACTCGGAAATCgaggaggacgaggaggaggaggacgaggaTTTGATCATGGTCGGTGTCAAGCCCTTTGGTGGATTTTCTCACTCTGCTAATGCCTCCAAGCCTCTCTCTCGTGGATCAGCAAGTGTGAAATCTGCTGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATCGCGGGATCCGTCAGCGTCCATGGGGAAAGTGGGCAGCTGAGATCCGGGACCCTAGAAAGGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCCGCAAGAGCATATGATGCTGAAGCAAGGAGGATTCGCGGCAAGAAAGCCAAGGTGAACTTCCCTGATGAGGCTGCAGGTGTTTCCTCAAAACGCTACAAGGCAAATCCAGAGGCACAGCCAATGAAGGAAAGTCTCAGCTCTGTGAAGCCAAAAATGAACTCAATGTTCAATTTTGGTGACAATCTGGAGGGCTACTACAGCCCTATGGATCAGGTGGAACAGAAGCCAATGGTTAACCAATTTGTTAACACTGCCCCATTTGCCGGAAATGGAGTTCAAGTCTCACCTGTGGTTACTCCATCTGCTGATGTTACTGCCTACTTCAGCTCTGAGCATTCAAGCAATTCGTTCGATTATTCTGACCTTGGTTGGGGTGAACAAGGCCCCAAGACTCCTGAGATCTCATCCATCCTTTCTGCTCCTTTGGAGGGTGAATCTCAGTTTGTGCAGGGTGGTGCTGATGAGAAGAAAAACACTTCTCAGGAAATGATCCCTGTGCAAAATGATTCTGCAAAGACTCTATCTGAGGAGCTTGCAGACATTGAATCTCAGCTGAAGTTCTTTGAGGCCCCTTTCCTTGATGGAAACTGGGTTGATGCTTCATTGGCGTCGTTGCTCAGCAGCGCGGATGCAACTCAGGACAACCCTATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATGGCAGGAGGAGTTTTCTGA 1164 0.4931 MCGGAIISDFIPAGPAGRSRRVTADILWPNLRNGKRFSKPVLDDDFEAGFRDFKDDSEIEEDEEEEDEDLIMVGVKPFGGFSHSANASKPLSRGSASVKSAESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEAAGVSSKRYKANPEAQPMKESLSSVKPKMNSMFNFGDNLEGYYSPMDQVEQKPMVNQFVNTAPFAGNGVQVSPVVTPSADVTAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSILSAPLEGESQFVQGGADEKKNTSQEMIPVQNDSAKTLSEELADIESQLKFFEAPFLDGNWVDASLASLLSSADATQDNPMNLWSFDDLPSMAGGVF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00461 387 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 PANTHER DNA-BINDING DOMAIN 1 381 IPR044808 GO:0003700|GO:0009873
Cca11g00461 387 PANTHER EREBP TRANSCRIPTION FACTOR 1 381 - -
Cca11g00461 387 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Cca11g00461 387 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 MobiDBLite consensus disorder prediction 84 122 - -
Cca11g00461 387 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 MobiDBLite consensus disorder prediction 85 102 - -
Cca11g00461 387 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Cca11g00461 387 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00461 Cca-Chr11 6360908 6365164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00461 1 387 AP2-EREBP Transcription Factor Family AT3G14230 44.660 2.47e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g00461 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00461 K09286 - gmx:100818646 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00461 11 6360908 6365164 Cca11g00461 11 6360908 6365164 ECH