Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00453 ATGGCTACCACCAACGCCGCCGCAGCCCCGCCGCGCACGCTCTCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGACGTCCACCTCGGCACCAAAAACTGCGATTTTCAGATGGAGCGTTACATCTTCAAGCGCCGCAATGACGGGATTTACATCATTAACCTTGGTAAGACATGGGAGAAGCTTCATCTTGCTGCTAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATCATTGTTCAATCCGCGAGGCCTTATGGTCAGAGAGCGATTCTGAAGTTTGCTCAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGTGAGCCTCGCCTTTTGATTCTCACCGATCCAAGAACTGATCACCAGCCTATTAAGGAAGCTGCTCTTGGGAATATCCCCACCATTGCTTTCTGTGACACTGATTCACCTATGAGGTATGTTGACATTGGAATTCCTGCCAACAACAAGGGAAAGCACAGCATTGGTTGTCTCTTTTGGCTTCTTGCAAGGATGGTGTTGCAGATGCGTGGTACCATTCGCCCTGGTCTCAAATGGGATGTCATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCGAAGCAACAAGAGGAGGAGGAAGCTGCAGCAGGTGATTATGCCATCACAGACTTCAATGCTGGTGCTATTGCTGCTGATGGGCAATGGCCTGGTGCAATTGATCAAACATGGACTGATGCAGTTCCAGCGCCTATTCCAGCTGCACCTGGTGTCAGCTGGGGGGCACCTGCAGAAGCTCCAGcagcagcagcagcagcagcagGAGATTGGGGTGAAGCTGTCCCACCACCACAAATCCCGCCTACCGGAATTGAATCTGTTCAACCAACTGGCTGGGATTAA 930 0.4989 MATTNAAAAPPRTLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLHLAARVIVAIENPQDIIVQSARPYGQRAILKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAAAGDYAITDFNAGAIAADGQWPGAIDQTWTDAVPAPIPAAPGVSWGAPAEAPAAAAAAAGDWGEAVPPPQIPPTGIESVQPTGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00453 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PANTHER 40S RIBOSOMAL PROTEIN SA 13 297 IPR005707 GO:0003735|GO:0006412|GO:0015935
Cca11g00453 309 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Cca11g00453 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 MobiDBLite consensus disorder prediction 276 309 - -
Cca11g00453 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Cca11g00453 309 Gene3D - 20 226 - -
Cca11g00453 309 Hamap 40S ribosomal protein SA [rps-0]. 8 289 IPR027498 GO:0003735|GO:0006412|GO:0015935
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca11g00453 309 PANTHER 40S RIBOSOMAL PROTEIN SA 13 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00453 Cca-Chr11 6215119 6216732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00453 5 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.558 1.04e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00453 K02998 - gmx:100805318 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00453 11 6215119 6216732 Cca11g00453 11 6215119 6216732 ECH