Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00446 ATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCCTTGGTTTGAACAAGGAGTGCACCGAATCGGAGTTAAAGAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCGGATCGTTGTTCAGCGTCTGGAAATTCTGAGTTAGTGGAAGAAGCTAAGAAGAAATTTCAGGAAATTGGGGAAGCCTATTCTGTCTTATCTGACGCCAACAAAAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCAGTCCAAATCAAATGAAAATGGAGACGAAAGTTTTGAGGAGTTGCAACAGCTGTTTGAAGACATGTTTCAAGCAGATATTGGATTGGATGGAAGCCCCTCTCTTGCTGCTGCTGATTGCTCTACTACATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAACTCCACTGAGATGAATTTTGGGAAGGCAAAGGATTCTTCTGTCCTTGATGCCAGTTACCAGAATTTCTGTTTTGGGACAGGTGAATCAACTCCAAGATATAATGAACGGAAAGGGGGGAATTCCAGAAGGAGGAGGTAG 624 0.4231 MANEGNKSNDFYTILGLNKECTESELKNAYRKLAKKWHPDRCSASGNSELVEEAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQSKSNENGDESFEELQQLFEDMFQADIGLDGSPSLAAADCSTTSAYMTYSESSSSNKRNSTEMNFGKAKDSSVLDASYQNFCFGTGESTPRYNERKGGNSRRRR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00446 207 MobiDBLite consensus disorder prediction 184 207 - -
Cca11g00446 207 Pfam DnaJ domain 10 78 IPR001623 -
Cca11g00446 207 Gene3D DnaJ domain 7 134 IPR036869 -
Cca11g00446 207 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 206 - -
Cca11g00446 207 CDD DnaJ 10 70 IPR001623 -
Cca11g00446 207 SMART dnaj_3 9 73 IPR001623 -
Cca11g00446 207 PRINTS DnaJ domain signature 12 30 IPR001623 -
Cca11g00446 207 PRINTS DnaJ domain signature 30 45 IPR001623 -
Cca11g00446 207 PRINTS DnaJ domain signature 53 73 IPR001623 -
Cca11g00446 207 PRINTS DnaJ domain signature 73 92 IPR001623 -
Cca11g00446 207 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Cca11g00446 207 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Cca11g00446 207 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
Cca11g00446 207 PANTHER PUTATIVE, EXPRESSED-RELATED 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00446 Cca-Chr11 6155933 6158661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00446 12 78 C2H2 Transcription Factor Family AT1G74250 45.588 3.12e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00446 - - gmx:100791192 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00446 11 6155933 6158661 Cca11g00446 11 6155933 6158661 ECH