Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00442 ATGTCACCCCTCCTTCTTCTGCCCTCCCCCACGTGTCGACGGTCACCGTCAACTCACCCCCTTCTGTCAAATGAAACCCCAAAAAAGATCGGCGGCATGGACGACGACGAGATCCAGTCGCATTCGTCGCCGGCGAGCGGATCCCCGGCGTCATCGTCGCGGCCGAACGGCAGGATAACGGTGACAGTGgcggccccggcgccgcagcctccgtcgccgccCGCGGTGAACGGCCTGGCATTAGCACTCCCGATCCAGCAGCCGGCGAAGGGAAACGACGGCGGCGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCAACGGCGGTGTTGATCGACGCCTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACCGACATCCAGTGCAAAAACCGGATCGACACCGTCAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGCCGCCGGTGCCATCAGCAAGTGGCCGTTCTACGACCGATTGGACCAGCTAATCGGTCCAACCGCCAAGATCCCTACCGCCGGGAACAGTAACCTACCGCCGCAGAAGGTTCCGTTAGGGATCCCTGTCGGCGTCCGTGGCGTCGCGAATCAGTTTCACCATCCTCAAAAGGCGCCAGCGACGAAGAGCCAGAAGATTCAGTTCCGGCGCTCTGGTCCTCCGGTGGAGTCCGCTTCGTCGGAGGGAGACGTGTCGTCGCCGGCGTCGAGCGACAGTTTTCCGCCGGAGAGATCGGAGCGGAAGAGGCGGCGGGTGACGAGCTCGAAGGGCGCGGCGAAAGGAAGGGACGGAGGTGGTCGGAAGGGGAAGGGTCGGAAGGGGAAGGGTTGGGGAAGCGCGGTGCGGGAATTGACCCAGGCGATTATTAAATTCGGCGAGGCTTATGAACAAGCGGAGAGCTCGAAGCTCCAGCAGGTGGTGGAGCTGGAGAAGCAGAGGATGAAGTTCGCTAAGGATTTGGAGTTGCAGAGAATGCAGTTCTTCATGAAGACTTAA 1071 0.5836 MSPLLLLPSPTCRRSPSTHPLLSNETPKKIGGMDDDEIQSHSSPASGSPASSSRPNGRITVTVAAPAPQPPSPPAVNGLALALPIQQPAKGNDGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGAISKWPFYDRLDQLIGPTAKIPTAGNSNLPPQKVPLGIPVGVRGVANQFHHPQKAPATKSQKIQFRRSGPPVESASSEGDVSSPASSDSFPPERSERKRRRVTSSKGAAKGRDGGGRKGKGRKGKGWGSAVRELTQAIIKFGEAYEQAESSKLQQVVELEKQRMKFAKDLELQRMQFFMKT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00442 356 Gene3D - 102 167 - -
Cca11g00442 356 MobiDBLite consensus disorder prediction 1 100 - -
Cca11g00442 356 MobiDBLite consensus disorder prediction 39 59 - -
Cca11g00442 356 MobiDBLite consensus disorder prediction 226 304 - -
Cca11g00442 356 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 38 356 IPR044823 -
Cca11g00442 356 MobiDBLite consensus disorder prediction 228 265 - -
Cca11g00442 356 Pfam Myb/SANT-like DNA-binding domain 99 189 IPR044822 -
Cca11g00442 356 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 38 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00442 Cca-Chr11 6113143 6115189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00442 34 356 Trihelix Transcription Factor Family AT3G14180 44.231 1.03e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca11g00442 Myb_DNA-bind_4 1.4e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00442 - - gmx:100782874 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00442 11 6113143 6115189 Cca11g00442 11 6113143 6115189 ECH