Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00440 ATGGCTGATTCTTCTTCCTTTGAGGGTGAATACCACTCAAGCCACCGGAGAAGACACTATCCAACACCAGTGAGTTACCTAAGTGTGTCTGGCTCTGGCTCCTTCATACCATCCAGCTCTCAAAGCAATCCTACTTCCATAACCCGAGGAGCTCGCCGCAACCGAGTTCCTGCCACACCTTTTGCCTCAGATGATGATCAGTCATGGAAAGAAGAGGTTTCATGGAAGTTTGAGGCCACAGGGTGGCGAGATTATAGCACAAGCTTTGGTTCTGCTGTGAGTCCTTGGCCAGCTAGCCCCCCTTCTGCTCACAGCCGTATATTTGGCCGATCAGCCAATGACTACTACCTTTCTAGGACAAGTAGGTTCAGGGGTCTCACAAACTCTTCTTATGAGCATTCTGGCCATGGTAGAGTTGAACTTCAAAGCTATGTTGCTAGGGATATGGACAATGAGTATAGTTACTTTGATCAGCATAGTCAGCCTCGTGGATTGCCAAAATTGGGGATCATCCAAGAGAGGAGGAATAGAAAAGATAAGACTAGTCCATTGGCTGATGAAGATGAGCTTAGCATGATAGATTATAGCATAACAGAAGATCATGCTATTTCACCTAGGAATGGTCATGGTCTTGAATTACCATATCTTAAACATGGTTATGTTGGTCATGAACTACCATCACATGGTAGCCAAGTTTATGAAAGTGGTGGGGGCTTTAGTCACCATTACAATGAGAAGTTTTCAGGATATGATGAAGAGGGTGAGGAGGATATGGATGAGGAAGATGCAAAGCCTCCAAAGACAGTTGGGTTGTTCAGCTTGTTTAAGTACTCAACAACGTGGGATTGGTTGCTTGTGTTTGTGGGGTGTATAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTCGGAGACTTGGTCAACAAGATTTCAGAAGCAGACAGTGACAAGAAACAGATGATGAAGGATGTAGAGAAGATATGCTTATTTATGGCTGGGCTTGCTGCTGTTGTGGTACTTGGAGCATATTTGCAGATCACTTGTTGGAGGTTAGTGGGGGAGCGATCTGCTCAAAGAATCAGAACTGAGTATCTAAGAGCGGTTCTTCGACAGGACATTACTTTCTTTGATACAGATATCAACACCGGTGATATCATGCATGGAATTGCTAGTGATGTTGCTCAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATATATTTACATTCATATGTGGGTACGCAGTTGGGTTTAAAAGATCATGGAAAGTCTCCATTGTGGTATTCTCAGTCACACCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGTCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAAGCCATCAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGCCAATTGGCTGGAAAATATGCTGAACTGCTGCAAAAATCAGCTCCAATAGGGGCAAAAGTTGGTTTTGCTAAAGGCATAGGCATGGGTGTTATCTACTTAATAACCTATTCAACATGGGCATTGGCTTTCTGGTATGGCTCTATATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTTTATTATAGAGAGAATCCCTGAGATTGATTCCTATAGCCCTGAGGGTAGGAAGCTTTCTTCTGTTCGTGGAAGGATTGAGTTAAAAAGTGTTAGTTTTGCATATCCATCTCGTCCTGATTCTCCGATACTTCATTCCCTTAATTTGGTATTACCATCTTCAAAAACCGTGGCATTGGTTGGTGCCAGTGGAGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTATTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTCCGTGATCAGATTGGGATGGTTGGTCAAGAGCCAGTTCTCTTTGCCACATCTATACTGGAAAATGTGATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTGCTGCTTGTGCTGCTGCCGATGCTCATAGCTTCATCTCTAACCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGTACAAAACTCTCAGGAGGTCAAAAGCAGAGAATTGCATTGGCTCGAGCAATGATCAAAGATCCTAAAATCCTTCTTCTAGACGAACCTACAAGTGCTCTTGATGCTGAGTCAGAGTCTGCGGTCCAACGGGCCATTGACAAGATATCTGCAGGCCGAACAACCATTGTGATTGCTCATAGGATAGCAACAGTGAAGAATGCTCATGGCATTGTGGTTCTTGAACATGGTTCTGTCACTGAGATCGGTGACCATCGCCAGCTTATGGCGAAAGCAGGAGCATACTACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCTAGCTATAGAAAATGGCATGCAAAATCCCAATGATTTATCCATATATGATAGATCAATTGCTGGTTTATCAGGATCAAGATATGTAGCTGATATCCCAAGGACTAAAGACTTACTGGAGGAGGAGAAACAAAAAGACATGGAAGATAAGCAAGACAAAATGGCAAGAAAATACAGAATTTCTGAAGTATGGAAATTGCAAATGCCTGAGCTTGTGATGCTTTTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATCCTGTCCCTTTTCCCATTGGTTCTGGGCATATCATTGGGAGTATATTTTGGCGACAGTGATAAGATGAAAAAAGATGTTGCACACCTTTGTTTAGTACTTGTTGGCCTTGGATTTTGTTGTATACTCTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGGGTTAGAGACCTCTTGTTTCAATCCATATTGAAACAAGAACCTGGGTGGTTTGACTTTGATGAAAACTCCACAGGAGTGTTGGTGTCAAGGCTCTCATTAGACTGTGTTAGTTTTCGTTCGGTGCTTGGTGACAGATTCTCAGTCCTTCTTATGGGGCTGAGTTCAGCTGCTGTTGGTCTTGGTGTGTCCTTTTTCTTCAATTGGAGACTAACCCTTGTGGCCGCTGCTGTAACTCCTTTCACACTTGGTGCAAGCTACATAAGCTTGATCATAAACATTGGACCACGAGTGGATAACGACTCTTATGGCAAAGCTAGTAACATTGCTTCTGGTGCAGTTTCAAACATAAGGACGGTTACTACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTAGGAGGAAGTCATTAAGAAGTTCACAAGTTCAAGGTTTCGTATTTGGGTTATTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTGTTGTTTGGTGCATTTCTTGTAGAACATGACAAGGCAAAACTTGGAGACGTGTTCAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTAGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCGGCTACAGCAATTCCTGCAGTTCAAGATATCATAAAACGTAAGCCACTGATTGACAATGATAGAACAGAAGGATGGAAGGTAGAGGGATCAAAGCCGTTCAACATTGAATTCAAGATGGTCACATTTGCATACCCTTCTAGGCCAGAGGTGACTGTTTTGAGGGATTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCTTTGGTGGGACCAAGTGGATCAGGGAAGTCAACAGTCATATGGTTGACACAGAGGTTCTATGATCCAGATCAAGGAAAGGTGATGATGAGTGGGATAGATTTGAGGGAGCTTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGGCTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGTTATGAAACGCAGGTTGGTGAAAGCGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGAGTGCTTTTACTTGATGAAGCAAGCAGTGCCTTGGACTTGGAGTCAGAGAAGCACATCCAAGAGGCCCTTAAGAAGGTTACCAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGACAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGATACTCTCATGGCTTCAACTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTAA 4491 0.4362 MADSSSFEGEYHSSHRRRHYPTPVSYLSVSGSGSFIPSSSQSNPTSITRGARRNRVPATPFASDDDQSWKEEVSWKFEATGWRDYSTSFGSAVSPWPASPPSAHSRIFGRSANDYYLSRTSRFRGLTNSSYEHSGHGRVELQSYVARDMDNEYSYFDQHSQPRGLPKLGIIQERRNRKDKTSPLADEDELSMIDYSITEDHAISPRNGHGLELPYLKHGYVGHELPSHGSQVYESGGGFSHHYNEKFSGYDEEGEEDMDEEDAKPPKTVGLFSLFKYSTTWDWLLVFVGCIGALINGGSLPWYSYLFGDLVNKISEADSDKKQMMKDVEKICLFMAGLAAVVVLGAYLQITCWRLVGERSAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSIVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLAGKYAELLQKSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSILIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDSYSPEGRKLSSVRGRIELKSVSFAYPSRPDSPILHSLNLVLPSSKTVALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPVLFATSILENVMMGKDNATKEEAIAACAAADAHSFISNLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHGIVVLEHGSVTEIGDHRQLMAKAGAYYNLVKLATEAISKPLAIENGMQNPNDLSIYDRSIAGLSGSRYVADIPRTKDLLEEEKQKDMEDKQDKMARKYRISEVWKLQMPELVMLFSGLILGMFAGAILSLFPLVLGISLGVYFGDSDKMKKDVAHLCLVLVGLGFCCILSMTGQQGLCGWAGSKLTQRVRDLLFQSILKQEPGWFDFDENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFFFNWRLTLVAAAVTPFTLGASYISLIINIGPRVDNDSYGKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQVQGFVFGLFQGAMYGAYTLTLLFGAFLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVQDIIKRKPLIDNDRTEGWKVEGSKPFNIEFKMVTFAYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGIDLRELDVKWLRRQMALVGQEPALFAGSIRDNIAFGDPNASWAEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQEALKKVTKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASTQNGLYASLVRAETEANAFS 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00440 1496 SUPERFAMILY ABC transporter transmembrane region 917 1233 IPR036640 GO:0005524|GO:0016021
Cca11g00440 1496 Pfam ABC transporter transmembrane region 286 557 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00440 1496 Pfam ABC transporter transmembrane region 930 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00440 1496 Gene3D - 608 868 IPR027417 -
Cca11g00440 1496 CDD ABC_MTABC3_MDL1_MDL2 1250 1488 - -
Cca11g00440 1496 Pfam ABC transporter 628 777 IPR003439 GO:0005524
Cca11g00440 1496 Pfam ABC transporter 1269 1416 IPR003439 GO:0005524
Cca11g00440 1496 Gene3D - 1246 1495 IPR027417 -
Cca11g00440 1496 MobiDBLite consensus disorder prediction 1 69 - -
Cca11g00440 1496 ProSitePatterns ABC transporters family signature. 1389 1403 IPR017871 GO:0005524
Cca11g00440 1496 MobiDBLite consensus disorder prediction 25 52 - -
Cca11g00440 1496 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cca11g00440 1496 CDD ABC_6TM_Pgp_ABCB1_D2_like 918 1232 - -
Cca11g00440 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 846 IPR003439 GO:0005524
Cca11g00440 1496 PANTHER - 98 1495 - -
Cca11g00440 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1214 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00440 1496 PANTHER ABC TRANSPORTER B FAMILY 98 1495 - -
Cca11g00440 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1250 1486 IPR003439 GO:0005524
Cca11g00440 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 846 IPR027417 -
Cca11g00440 1496 CDD ABC_MTABC3_MDL1_MDL2 610 847 - -
Cca11g00440 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 287 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00440 1496 SUPERFAMILY ABC transporter transmembrane region 266 594 IPR036640 GO:0005524|GO:0016021
Cca11g00440 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1487 IPR027417 -
Cca11g00440 1496 Gene3D ABC transporter type 1, transmembrane domain 241 323 IPR036640 GO:0005524|GO:0016021
Cca11g00440 1496 Gene3D ABC transporter type 1, transmembrane domain 333 1215 IPR036640 GO:0005524|GO:0016021
Cca11g00440 1496 CDD ABC_6TM_Pgp_ABCB1_D1_like 287 583 - -
Cca11g00440 1496 SMART AAA_5 637 838 IPR003593 -
Cca11g00440 1496 SMART AAA_5 1277 1463 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00440 Cca-Chr11 6074357 6085676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00440 952 1493 Calmodulin-binding Proteins AT2G36910 37.684 1.00e-105 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00440 K05658 - gmx:100816700 2533.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00440 11 6074357 6085676 Cca11g00440 11 6074357 6085676 ECH