Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00435 ATGGCGACCAAAGATTCGGCTCTGGAGTTGCACGAAATCACCACTGATTCTGAAGGATCCGACGCGGATCCCGAATGGGGCGATTCCGATTATGAAGACCCCGATTTCGACGTGCACGAAGAAACCCAAATCAACTTCTCTAACTTTTCACTTAAGCACAACCCAAAAACAGCGCGCGTTGTCGAAGATAAGGGTCTTGGTGAGGAGGTGTTGGAAGCGACTTCATCTGTTCGTGATGGAGAGAATTTTGATAAAGTTCAAAAACTAATCGAAGCGGGACTGGTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGGAACAAGGAAACGCTAATACAACGCATAAAGGAGCATTTAGAGATTTTACATGGAGGGGAGAAAAAGTATCCACCTTCTAGTTTTGTGCTTAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAGCAACAGCATACGTTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTCTCCCTCCCCTTCACCCCTTACTGATTAAAGGTCGAAACCTTTACAGGTTGAAGACAATGAGACAGAAATGGGAGGATGAAGTAAAAAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATCTTTTGCAAGGGCAGATAGAGAAGCGAGGATACAAGAAAAGGAGAAGAGGAAAAAAGTTAGAGAAAATAGGGTCTCCAAAAAGGATTCAGCAAGGAACCAATGTCAAGAAACAAATGTACCCACTAATCTAGAAAAGTCAGAATTTCCATCTCGAAATTCTGGTTTATCTGCCCACATTGGGAAAGAAACATTGGCTAATAAACCTCTAGTTATACCCGGACAATGTGTTGATTCTAAAACTATGGCTATGGGAATGGGATCTGACCAATTGGAAACTAGATCATTTCCTGTTCACCACATACATAATCAGCAACCTTGGAATCCCACAACTGGTTGTAGGAGTACTTTTAATACTGATCATATGAGGGGAGCTTCACTTGGTGCAAACTACAACTATGCTAACCTCCATTTCAGAGAAATACCTATTAATATCGAGAAAAACTACCCTTTCATTGCTGGGGCAACTGGATTTACAGGGTGGAATCATCAAAGGGTGCCTTTGGCAAATGCAAACTACTCTCACCCGATGATGCCCAACAGAGAAAGCCATAAGCAAACCCAGCTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACACCTGCAAATTCTTGCATGATTTGAGAGACACGGGGAATGTGTGA 1419 0.4299 MATKDSALELHEITTDSEGSDADPEWGDSDYEDPDFDVHEETQINFSNFSLKHNPKTARVVEDKGLGEEVLEATSSVRDGENFDKVQKLIEAGLVEKLKVDECKLYLRKNGLRLTGNKETLIQRIKEHLEILHGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTMRQKWEDEVKRQKILMEKHSRGSFARADREARIQEKEKRKKVRENRVSKKDSARNQCQETNVPTNLEKSEFPSRNSGLSAHIGKETLANKPLVIPGQCVDSKTMAMGMGSDQLETRSFPVHHIHNQQPWNPTTGCRSTFNTDHMRGASLGANYNYANLHFREIPINIEKNYPFIAGATGFTGWNHQRVPLANANYSHPMMPNRESHKQTQLCRHYSRGRCYFGDTCKFLHDLRDTGNV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00435 472 Gene3D - 429 471 - -
Cca11g00435 472 SMART sap_9 95 129 IPR003034 -
Cca11g00435 472 MobiDBLite consensus disorder prediction 254 312 - -
Cca11g00435 472 Gene3D SAP domain 84 140 IPR036361 -
Cca11g00435 472 MobiDBLite consensus disorder prediction 254 287 - -
Cca11g00435 472 ProSiteProfiles Zinc finger C3H1-type profile. 441 467 IPR000571 GO:0046872
Cca11g00435 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 442 465 IPR000571 GO:0046872
Cca11g00435 472 SUPERFAMILY CCCH zinc finger 440 465 IPR036855 GO:0046872
Cca11g00435 472 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 5 468 - -
Cca11g00435 472 SUPERFAMILY SAP domain 85 130 IPR036361 -
Cca11g00435 472 ProSiteProfiles SAP motif profile. 95 129 IPR003034 -
Cca11g00435 472 MobiDBLite consensus disorder prediction 288 312 - -
Cca11g00435 472 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 5 468 IPR045124 GO:0003723|GO:0045892
Cca11g00435 472 MobiDBLite consensus disorder prediction 19 34 - -
Cca11g00435 472 Pfam SAP domain 96 129 IPR003034 -
Cca11g00435 472 MobiDBLite consensus disorder prediction 1 34 - -
Cca11g00435 472 SMART c3hfinal6 440 466 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00435 Cca-Chr11 5983408 5986951 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g00435 SAP 4.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00435 - - gmx:100815642 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00435 11 5983408 5986951 Cca11g00435 11 5983408 5986951 ECH