Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00431 ATGCTGTTTGCTTGCTTTTCTGTCTACCCCACTTGTTCGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTTCGTAATCAGCAGGATGCACAAAACGCTAGAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTTTGGTGGAACTAACGAATGGCTCATCTGAAGACGGTAAAGAGACATGTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTTACTGTTTATGCAACACAACTTGA 336 0.4226 MLFACFSVYPTCSVMWDQKTGRSRGFGFVSFRNQQDAQNARNDLTGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSLVELTNGSSEDGKETCNSDAPENNPQYTYCLCNTT 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00431 111 MobiDBLite consensus disorder prediction 64 101 - -
Cca11g00431 111 MobiDBLite consensus disorder prediction 61 101 - -
Cca11g00431 111 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 105 - -
Cca11g00431 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Cca11g00431 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 55 IPR000504 GO:0003723
Cca11g00431 111 SUPERFAMILY RNA-binding domain, RBD 4 68 IPR035979 GO:0003676
Cca11g00431 111 Gene3D - 1 95 IPR012677 -
Cca11g00431 111 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00431 Cca-Chr11 5962451 5964016 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00431 2 60 Eukaryotic Initiation Factors Gene Family AT5G06000 47.458 4.51e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00431 K13201 - gmx:100781227 201.445