Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00428 ATgcagaatcacaggctgaagcagcagcaacagcaacaacaacagcaAGCTCTGATGCAGCAAGCTCTTCTTCAGCAGCAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCCGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGATGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGGAGGCATCTATTTGGCCAACCTATCAAAGTGAATTGGGCATATGCTAGTGGTCAAAGGGAGGATACATCAGGTCATTACAGCATATTTGTTGGTGATCTGAGTCCTGAGGTTACAGATGCTACGCTGTTTGCATGCTTTTCTGTCTACCCCACTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTTCGTAATCAACAGGATGCACAAAGCGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGACGGTAAAGAGGCATGTAACAGTGATGCTCCAGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAATCTTGCTTCAGAGGCAACACAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTCCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTCAGGTACAGTACTCATGCTGAAGCAGCTCTTGCTATTCAGATGGGGAATGCCCAATCGCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCAGGAACTGCATCAAATCCCCTTCCCCCGCCTGCTGCTGCATCTCTGCCTGGTCTGTCTGCAACAGATCTTTTGGCATATGAACGACAGCTGGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCTCAAGGGCAACATCCTCTTAAACAGGCAGCCATTGGAGCCAGCCAGGCAATATACGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1269 0.4531 MQNHRLKQQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYSIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSVVELTNGSSEDGKEACNSDAPENNPQYTTVYVGNLASEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00428 422 SMART rrm2_1 144 217 IPR003954 GO:0003676
Cca11g00428 422 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Cca11g00428 422 Gene3D - 230 343 IPR012677 -
Cca11g00428 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Cca11g00428 422 SUPERFAMILY RNA-binding domain, RBD 256 346 IPR035979 GO:0003676
Cca11g00428 422 Coils Coil 1 21 - -
Cca11g00428 422 Gene3D - 1 141 IPR012677 -
Cca11g00428 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 403 - -
Cca11g00428 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 339 IPR000504 GO:0003723
Cca11g00428 422 CDD RRM3_TIA1_like 264 339 - -
Cca11g00428 422 CDD RRM1_TIA1_like 60 130 - -
Cca11g00428 422 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 403 - -
Cca11g00428 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Cca11g00428 422 SUPERFAMILY RNA-binding domain, RBD 137 228 IPR035979 GO:0003676
Cca11g00428 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 325 IPR000504 GO:0003723
Cca11g00428 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Cca11g00428 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Cca11g00428 422 Gene3D - 142 222 IPR012677 -
Cca11g00428 422 MobiDBLite consensus disorder prediction 224 260 - -
Cca11g00428 422 MobiDBLite consensus disorder prediction 221 260 - -
Cca11g00428 422 SMART rrm1_1 265 335 IPR000504 GO:0003723
Cca11g00428 422 SMART rrm1_1 144 217 IPR000504 GO:0003723
Cca11g00428 422 SMART rrm1_1 59 128 IPR000504 GO:0003723
Cca11g00428 422 CDD RRM2_PUB1 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00428 Cca-Chr11 5950665 5955551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00428 141 332 Eukaryotic Initiation Factors Gene Family AT1G49760 30.256 3.12e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00428 K13201 - gmx:100781227 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00428 11 5950665 5955551 Cca11g00428 11 5950665 5955551 ECH