Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00427 ATGTCAAGCCTCCCCAACACGCCGTCGGAAGCCCGCAGGTCCGGCAAGGCACCGGAAAAATCCACTTTTTCTCAGACTTGCAGCCTCTTGAGCCAGTTCTTGAAAGAGAAACGTGCTTCTGCTGATTCCACTCTTGGAATGGGTGCCAAAATTGAACCTAGAGCTTGTACCAAGGATTTGTTAGGCAGCATGCAAAACTCAGATGGGGCTTTGAGACTAAACGCTTCTGCCATGGATTCTCTCCCCCAGCTTGTGGAAAATCCCTGCATTAAGAAGTCTAGTTCACCGGGACCTGAATCTCCCCAATTGACAATATTCTATGCTGGAAAAATGTTGGTATTTGATGCTTTTCCGCCGGAGAAGGCAACCGAGGTCATGGAGATGGCCACCAAGTTAGCCTCGGACAGCTCCGGAACCGAAGAAAGTCTCCCTAGTGATCCAGTTACCACTGAAAAATTGGCTGTGCCCGATGTGCCTCAAAAAAGCCCTTCTTCAGAAACCCCTAAGCCAGGAAACCAAGGGGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTCTTAAATTTCTTGAGAAAAGAAAAGAAAGGGTTAATGCTAGAGGGCCTTACCAAATCAACAACCACAAGGCAGAGGGAAGCAGTTCAGGGGGTGAACCTGAAGATCAGTGTTCCAAACACTTTGACCTTAACTTGTAG 699 0.4793 MSSLPNTPSEARRSGKAPEKSTFSQTCSLLSQFLKEKRASADSTLGMGAKIEPRACTKDLLGSMQNSDGALRLNASAMDSLPQLVENPCIKKSSSPGPESPQLTIFYAGKMLVFDAFPPEKATEVMEMATKLASDSSGTEESLPSDPVTTEKLAVPDVPQKSPSSETPKPGNQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQINNHKAEGSSSGGEPEDQCSKHFDLNL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00427 232 MobiDBLite consensus disorder prediction 185 200 - -
Cca11g00427 232 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g00427 232 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 226 IPR040390 -
Cca11g00427 232 MobiDBLite consensus disorder prediction 130 146 - -
Cca11g00427 232 ProSiteProfiles Tify domain profile. 96 131 IPR010399 -
Cca11g00427 232 Pfam tify domain 98 129 IPR010399 -
Cca11g00427 232 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 226 - -
Cca11g00427 232 MobiDBLite consensus disorder prediction 128 232 - -
Cca11g00427 232 Pfam Jas motif 183 205 IPR018467 -
Cca11g00427 232 SMART tify_2 96 131 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00427 Cca-Chr11 5908964 5911724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00427 12 206 Tify Gene Family AT1G19180 33.186 1.54e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca11g00427 tify 3.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00427 K13464 - gmx:100778559 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00427 11 5908964 5911724 Cca11g00427 11 5908964 5911724 ECH