Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00426 ATGAAAGTAATGGCGATAGCTCCGGCGATAATCTTGCAGCCAACTCTTATCATCATCGTGGCTTTGCCTGTGATATATTCCATGACAGAAGCAGAAGCTTTGGTGGCACTAAAAAAATCGTTCTCCAACTCCGAAGCTTTGGTTAGTTGGGTGGCTGATTCGGTACCTTGTAGTGAAGATGATCAATGGCAAGGCGTTGCTTGCAACAATGGCCTTGTCACGGGGCTTCGCCTTGGAGGAATGGGGCTCTTAGGGGAAATAAATATTGATGCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTCAACAACAATTCTTTCTCAGGCAACATGCCAGAGTTCAACCGAATAGGGTTCTTGAAAGGGATGTATTTGCAAGGGAACAAGTTTTCTGGGGATATTCCTCAGGAGTACTTCCAAAGAATGAGGTCTTTGAAGAAATTGTGGCTCTCTGATAACCAATTCACGGGGAACATTCCTTCCTCGTTGGGAGAGATGCCTCAGCTCATGGAGTTGCATCTTGAGAACAACCAGTTTAGTGGAAGCATTCCTAAGATGAATAACCCGGCGTTGGTGAAATTCGATGTTTCCAACAACAAGTTGGAAGGTGAAGTTCCGGCTAGTTTGTTGAAGTTCAACAAGAGCTCCTTTGCCGGGAATTCTGGTCTTTGTGGTGAGAAGTTTGGAAAATCATGTGAAGAGAAAACGGAGAATCCAAGTCCCATTGATGCAAAAAATAGTAGTGGTTTGCCAGGTGGTAGCTCTTTGCAGATTATTGGCTTTATAATAGCGAGTGTGGTGCTTGTCTCGCTCGTTGTGTTTTGTATTGTGAGATCAAGGCGAAAGAAGGAGGAGGGGAGTTTTGTCATGTTTGAAGATATCAATGAAGGTGCAGTGGAAGTTCAAGTGACTGCACCAGTGAAAAGGGATTTGGATGGAAGTTCAAGTGCAAGTGCAAGTTCATTTTCAAGTTCAACAATTAGAAAAATATCCTCCGGCAGAAGGGCATCTGGTCAAGGTAAAAACGTGGGGGAACTTGCGATGGTGAATGATGAGAAGGGTGTGTTTGGTTTGCCAGATTTGATGAGGGCCGCTGCGGAAGTGCTGGGAAATGGATGCTTTGGATCTTCTTACAAGGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACTAGAGAGATGAATGTTTTGGAAAAAGATGATTTTGATGCAGAGATGAGGAAGCTTGCAAAGCTCAAACACTGGAATATATTGAGCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTTATCTCTGAGTATGTTCCGGGAGGCAGTCTACTGTTTTCACTTCATGGTGACAGAGGACCATCGCATTCTGAGCTTGATTGGCCTGCTCGTTTGAAGATAGCACGTGGAATTGCTGAAGGGATGCGTTTTCTTTACACAGAACTTGCTACCTATGATCTACCACATGGCAATCTCAAGTCCAGCAATGTTCTCCTAGGACCAGATAATGAACCAATGCTTGTAGATTACGGGTTCAGCCACATGGTGAACCCTTCCACTATTTCACAGGTGCTATTTGCTTTCAAGGCACCAGAGGCAGCACAACATGGCCAACTTTCACGTAGTTGTGATGTTTACTGTCTCGGGGTTGTCATACTCGAGATGCTCACAGGGAAATTCCCCTCTCAGTACCTTAGCAATGGTAAGGGTGGAACTGATGTGGTGCAATGGGTTGAGAATGCAATCTCTGAGGGAAGGGAATCCGAATTGCTTGATCCTGAAATTTCAAGCTCTAGGAAATCACTTGGAGAGATGCAGCAACTCCTCCACATTGGTGCTGAATGCACTAAAAGCGACCCTCAGCAACGGTTAGACATGGGAGAAGCTATTAGAAGGATAAAGGAGTTAACACCCGAGGGTGGCCATCAAGAATCAAGAACAATAGAGGTCTGGTCATCTCCTAGAGGGTCTCCGGTATTTGACAACCAAGAACCCGGGATTAGACATGGATCAAACAGCTTCGGAAGCAGCAGGGATAATTTTGACTTCTAG 2055 0.4501 MKVMAIAPAIILQPTLIIIVALPVIYSMTEAEALVALKKSFSNSEALVSWVADSVPCSEDDQWQGVACNNGLVTGLRLGGMGLLGEINIDALLELKGLRTISLNNNSFSGNMPEFNRIGFLKGMYLQGNKFSGDIPQEYFQRMRSLKKLWLSDNQFTGNIPSSLGEMPQLMELHLENNQFSGSIPKMNNPALVKFDVSNNKLEGEVPASLLKFNKSSFAGNSGLCGEKFGKSCEEKTENPSPIDAKNSSGLPGGSSLQIIGFIIASVVLVSLVVFCIVRSRRKKEEGSFVMFEDINEGAVEVQVTAPVKRDLDGSSSASASSFSSSTIRKISSGRRASGQGKNVGELAMVNDEKGVFGLPDLMRAAAEVLGNGCFGSSYKAVMANGVAVVVKRTREMNVLEKDDFDAEMRKLAKLKHWNILSPLAYHFRKDEKLVISEYVPGGSLLFSLHGDRGPSHSELDWPARLKIARGIAEGMRFLYTELATYDLPHGNLKSSNVLLGPDNEPMLVDYGFSHMVNPSTISQVLFAFKAPEAAQHGQLSRSCDVYCLGVVILEMLTGKFPSQYLSNGKGGTDVVQWVENAISEGRESELLDPEISSSRKSLGEMQQLLHIGAECTKSDPQQRLDMGEAIRRIKELTPEGGHQESRTIEVWSSPRGSPVFDNQEPGIRHGSNSFGSSRDNFDF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00426 684 Pfam Protein kinase domain 368 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00426 684 Pfam Leucine rich repeat 122 180 IPR001611 GO:0005515
Cca11g00426 684 Gene3D Transferase(Phosphotransferase) domain 1 441 648 - -
Cca11g00426 684 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cca11g00426 684 ProSiteProfiles Protein kinase domain profile. 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00426 684 Gene3D Ribonuclease Inhibitor 118 234 IPR032675 -
Cca11g00426 684 MobiDBLite consensus disorder prediction 639 684 - -
Cca11g00426 684 MobiDBLite consensus disorder prediction 667 684 - -
Cca11g00426 684 SUPERFAMILY L domain-like 29 213 - -
Cca11g00426 684 Gene3D Ribonuclease Inhibitor 24 117 IPR032675 -
Cca11g00426 684 SUPERFAMILY Protein kinase-like (PK-like) 368 633 IPR011009 -
Cca11g00426 684 Gene3D Phosphorylase Kinase; domain 1 337 439 - -
Cca11g00426 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 641 - -
Cca11g00426 684 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00426 Cca-Chr11 5854528 5858180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00426 16 638 Receptor kinase-like Gene Family AT3G42880 45.728 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca11g00426 Pkinase 5.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00426 - - gmx:100814059 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00426 11 5854528 5858180 Cca11g00426 11 5854528 5858180 ECH