Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00419 ATGAGCGTGTTGGCTGGGAAACGCAAGCGCCAGGACTTGGCTTCGTCGCTATCTGCAACACTGAGCAACGAGGAGCGCGTTGTGTACAACATCATTAGGGGTAGGAAGGAGATGGGGATATGGCAGGGAGACATAAAGCGAGAAACCAACATCCCCGATAGCCTCATGAAGAAATCCATCAAGATGCTTCTCACCAAGACCCTCATCAAGGAGGTCGTCAACATCCAAAACAAGTCCAAGAAGGTGCTCATGGCAGTGGAATTTGAACCCTCCAAGGAGATCACTGGTGGGGAGTGGTACACTGAGGGCAAACTTGACACGCAGTTAATCGAAGCCCTGTCTGATGTTTGTATGAAGCTCATTCTTCGCCAGAAAGTCGCCACACGCGAGGGGATCCTTGACTGGATTAGGAAGGTTGGGAGTGAGATTTTCCCTGGTGGAGTCAGTGCAGGGCAGGTGGAACAGATTTTGAAGGTTTTGGTTATGGAGAACAAGGTGCAGGAGGTGAATAGTACCGGCTTTGGGGATTTTGCTTCTGTGCCTGTTGGTGAAGTTTGTTATAGATTGGCTAAGAAGACTGGTGGTGAGGTCAAAGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCAAGGATTAATGCTTGTACACCCGATGTTGAAGGATGTAAACTTATCAGAAAGGAGAAGTCATCCAATGGATTTATTCATTACTTTGATCGCAGATATGCTGCTCTTGCCATACTATCTCTCAATGGGAGGCATCTATTTGGCCAACCTATCAAAGTGAATTGGGCATATGCTAGTGGTCAAAGGGAGGATACATCAGGTCATTACAACATACAACATATTTGTTGCATGGCTCATCAATTTTATTTTTATGGTTGCTCTGGAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTTCGTAATCAGCAGGATGCACAAAACGCTAGAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTTTGGTGGAACTAACGAATGGCTCATCTGAAGACGGTAAAGAGACATGTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTTACTGTTTATGTGGTGTGATAAAGGGTTTGGTTTCGTCAGTTACAGTACTCATGCTGAGGCAGCTCTTGCTATTCAGATGGGGAATGCCCAATCTCTTCTCTGGAAAACAAATTAAGTGGTCTTGGTGGAGCAAGCCCACTCCGCCAGGAACTGCATCAAATCCCCTTCCCCTGCCTGCTGCTGCATCTCTGCCTGGTGACCTGGCAGCCATTGGAACCAGCCAGGCAATATACGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1464 0.4652 MSVLAGKRKRQDLASSLSATLSNEERVVYNIIRGRKEMGIWQGDIKRETNIPDSLMKKSIKMLLTKTLIKEVVNIQNKSKKVLMAVEFEPSKEITGGEWYTEGKLDTQLIEALSDVCMKLILRQKVATREGILDWIRKVGSEIFPGGVSAGQVEQILKVLVMENKVQEVNSTGFGDFASVPVGEVCYRLAKKTGGEVKVGAMASIPCGVCPRINACTPDVEGCKLIRKEKSSNGFIHYFDRRYAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIQHICCMAHQFYFYGCSGDARVMWDQKTGRSRGFGFVSFRNQQDAQNARNDLTGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSLVELTNGSSEDGKETCNSDAPENNPQYTYCLCGVIKGLVSSVTVLMLRQLLLFRWGMPNLFSGKQIKWSWWSKPTPPGTASNPLPLPAAASLPGDLAAIGTSQAIYDGGFQNVAAAQQMMYYQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00419 487 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 181 403 - -
Cca11g00419 487 SUPERFAMILY "Winged helix" DNA-binding domain 17 87 IPR036390 -
Cca11g00419 487 Gene3D - 2 80 IPR036388 -
Cca11g00419 487 SUPERFAMILY RNA-binding domain, RBD 291 354 IPR035979 GO:0003676
Cca11g00419 487 Gene3D - 215 284 IPR012677 -
Cca11g00419 487 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 425 461 - -
Cca11g00419 487 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 181 403 - -
Cca11g00419 487 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 425 461 - -
Cca11g00419 487 SMART rrm1_1 285 345 IPR000504 GO:0003723
Cca11g00419 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 343 IPR000504 GO:0003723
Cca11g00419 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 349 IPR000504 GO:0003723
Cca11g00419 487 MobiDBLite consensus disorder prediction 349 383 - -
Cca11g00419 487 Pfam RNA polymerase Rpc34 subunit 18 129 IPR007832 GO:0005666|GO:0006383
Cca11g00419 487 Gene3D - 288 363 IPR012677 -
Cca11g00419 487 MobiDBLite consensus disorder prediction 352 383 - -
Cca11g00419 487 SUPERFAMILY RNA-binding domain, RBD 219 272 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00419 Cca-Chr11 5738324 5742172 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00419 291 348 Eukaryotic Initiation Factors Gene Family AT3G11400 46.552 3.72e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00419 K13201 - gmx:100781227 360.147