Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00417 ATGTCTGCACCGATGATCATTGACCCTATGGTGATATCGGCACCAGAAACTCAATCAGCAGCTAGCATACTAGTTGCACAAAGTGAAGTTGAATTTGCCGTGTGTGACTGTTGTGGGCTAACAGAAGAGTGCCCCCCAGCCTATATAGAAAGAATCAGGGAGAGGTACTATGGAAAATGGGTTTGTGGGTTGTGTGCTGAGGCTGTTAAGGATGAAATTGTAAGGTCTGAGAGGCTTGTTAGCACAGAAGAAGCAATGGCCAAGCATATGAACTTCTGCAAAAAGTTCAAGGCATCAGGGCCTCCACCAAATCCAACAGTGCACTTGATATCAGCCATGAGACAGATTCTAAGAAGGACTTTGGATTCCCCTAGAGTAAGGTCCACACCAAGTAGTCCAACTATGACTAACACAGAAATTCATGGTTCTGTTCTCACAAGGTCTGAGAGCTGCTTCTCTACCCTCTCTGGTTCATGA 477 0.4549 MSAPMIIDPMVISAPETQSAASILVAQSEVEFAVCDCCGLTEECPPAYIERIRERYYGKWVCGLCAEAVKDEIVRSERLVSTEEAMAKHMNFCKKFKASGPPPNPTVHLISAMRQILRRTLDSPRVRSTPSSPTMTNTEIHGSVLTRSESCFSTLSGS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00417 158 Pfam Protein of unknown function (DUF1677) 30 119 IPR012876 -
Cca11g00417 158 PANTHER OS01G0745000 PROTEIN 17 155 IPR012876 -
Cca11g00417 158 PANTHER DUF1677 FAMILY PROTEIN (DUF1677) 17 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00417 Cca-Chr11 5725557 5727845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00417 - - gmx:100803697 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00417 11 5725557 5727845 Cca11g00417 11 5725557 5727845 ECH
Cca11g00417 11 5725557 5727845 Cca03g01667 03 35790001 35790420 ECH
Cca11g00417 11 5725557 5727845 Cca05g00456 05 9998276 9999204 ECH