Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00416 ATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTTCGTAATCAGCAGGATGCACAAAACGCTAGAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTTTGGTGGAACTAACGAATGGCTCATCTGAAGACGGTAAAGAGACATGTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTTACTGTTTATGTGGTGTGATAAAGGGTTTGGTTTCGTCAGTTACAGTACTCATGCTGAGGCAGCTCTTGCTATTCAGATGGGGAATGCCCAATCTCTTCTCTGGAAAACAAATTAAGTGGTCTTGGTGGAGCAAGCCCACTCCGCCAGGAACTGCATCAAATCCCCTTCCCCTGCCTGCTGCTGCATCTCTGCCTGGTGACCTGGCAGCCATTGGAACCAGCCAGGCAATATACGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 558 0.4624 MWDQKTGRSRGFGFVSFRNQQDAQNARNDLTGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSLVELTNGSSEDGKETCNSDAPENNPQYTYCLCGVIKGLVSSVTVLMLRQLLLFRWGMPNLFSGKQIKWSWWSKPTPPGTASNPLPLPAAASLPGDLAAIGTSQAIYDGGFQNVAAAQQMMYYQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00416 185 MobiDBLite consensus disorder prediction 50 81 - -
Cca11g00416 185 SUPERFAMILY RNA-binding domain, RBD 1 54 IPR035979 GO:0003676
Cca11g00416 185 MobiDBLite consensus disorder prediction 47 81 - -
Cca11g00416 185 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 123 159 - -
Cca11g00416 185 Gene3D - 1 81 IPR012677 -
Cca11g00416 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Cca11g00416 185 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 123 159 - -
Cca11g00416 185 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 102 - -
Cca11g00416 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Cca11g00416 185 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00416 Cca-Chr11 5720889 5722761 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00416 3 46 Eukaryotic Initiation Factors Gene Family AT3G11400 54.545 6.92e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00416 K13201 - gmx:100781227 241.891