Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00415 ATGAAAGCGCCAAATGCTTTGTTTGGTGCAAGACGCAGAAATTTTCACGGGCTTTTCAACGGATTGTGTGCCATGGTCGTGTTTTTCTTCTTTTACAATCGGGAAGACATCATTCGCAACCCTCTTCTTAGGCAATCATCGTTTTTTGTGAACCATGGTTCGCCCCAAAATTCGAATTTGAAAGATGCGCCTTCCGTGATTCACCGTCGAATGGTTGAAATCCGCCCCAACTCTTCAAATGTAGCTGGTGGCGAAGATTTAGGCGTGAGTAGTTCTGGATTATGTGCTGGGTTGGTCCACCATGATGGTTATGCTAGTTCCTGTGAATTCTTGAAGGTCAATCCACAATGTTCTTCTGATGGGTATCTTGATTACTTGAACTTTTTCTATTGTACATGTCAGAGTTTTAGAGTGTTTGGTTATCTAGTATTGGGTGTGTGGCTTGCTGCTTTGTTTTATCTCCTGGGGAACACTGCTGCAGACTATTTTTGCCCTTCTCTTGAGCAGCTCTCAAGGCTCTTGAAACTGCCTCCAACTGTGGCTGGGGTTGTGCTGCTTCCACTTGGGAATGGAGCACCTGATGTGTTTGCAAGTATAGCTTCCTTTGTGGGTGCTGAAAGTGGTGAAGTTGGTCTTAACAGTGTGTTGGGTGGTGCTCTTTTTGTTACCACTATTGTTGTTGGAGCTGTTTCGCTGTGTGTTGCGGAGAAGGGGATTGGAATCGATCGAAGATGCTTTATAAGGGATGTGACTTTCTTTCTAGTCACACttgtttcgctgcttttgattttggttgttggtaaggtgggtgttggAGCGGCCATTGCTTTTGTGTCCATATATATTGTTTATGCATTTGTTGTTGCTGCCAATGAGTTATTGAGGAAACATGCACAGAGGTTGAAATTGGATGCTGTCACACCTTTGCTTCCTGTACAGGGAAGTGTGTTCTCTCTAGGTTCTGAAGAGGATACTTCTATCTATAGCTCTTTGCTTGAAGACACCGATAGTGATCCTCCCCACCTTCCTCCATCCTTGCCGCAGTGGATGTGGTCTTCAAATGTGGCTATATATTCAAACCAGGGAAGCGTCCATTATTTGGATGATGAGAGGCCCCCCTGGGGATGGAGTGATGGGTCCACGGAAAACAGCAAGATGTCGTTCTCCGTTTCCAAACTTTTTCTGCTGCTGGAGATTCCACTGGCAATTCCTAGGCGGTTAACAATTCCAATGGTCATTGAGGAACTATGGTCAAAGCCTTATGCTGTGGCCAGTGCTTCATTGGCTCCCATTCTCCTAGCCTTTCTGTGGAGCACCCAAGATAATGTGAGTAATCATGGTGTCATTCTTTCTTATTGTGCGGGTGTTGCTGTTGGATGCACATTAGGTATCCTTGCATATAGATTCACAGTGTCGGATCATCCACCGCCTCAGTTTTTGCTCCCTTGGGTTCTTGGAGGATTCATCATGAGCATAGTGTGGTTCTACATAATAGCAAATGAGCTTGTGGCTCTACTGGTAGCGTTTGGTATAATTTTCGGAGTTAATCCATCCATTTTGGGATTAACCGTACTAGCATGGGGAAATTCAATGGGAGATTTGATGTCAAATGTTGCATTGGCATTGGATGGAGAAGATGGAGTTCAGATTGCCTTATCTGGATGTTATGCGGGTCCTATGTTCAACACACTTGTTGGTTTGGGGATCTCGTTGCTGATTGGGGCATGGTCAAAGAAACCCTCTTTGTATGTGGTGCCTGAAGACAGGAGCTTATTTTACACCATGGGATTTCTGATCACAGGACTGTTATGGGCACTTCTTGTTTTACCTCGCAACAACATGCATCCCAACAGAATATTAGGAATGGGTCTCGTCACCCTGTATTTGATATTTCTTTCTTTCAGGGTGTGCACTTCTATGGGGCTTATAGCCTTAGCTGGTTTAAGTTGA 1950 0.4364 MKAPNALFGARRRNFHGLFNGLCAMVVFFFFYNREDIIRNPLLRQSSFFVNHGSPQNSNLKDAPSVIHRRMVEIRPNSSNVAGGEDLGVSSSGLCAGLVHHDGYASSCEFLKVNPQCSSDGYLDYLNFFYCTCQSFRVFGYLVLGVWLAALFYLLGNTAADYFCPSLEQLSRLLKLPPTVAGVVLLPLGNGAPDVFASIASFVGAESGEVGLNSVLGGALFVTTIVVGAVSLCVAEKGIGIDRRCFIRDVTFFLVTLVSLLLILVVGKVGVGAAIAFVSIYIVYAFVVAANELLRKHAQRLKLDAVTPLLPVQGSVFSLGSEEDTSIYSSLLEDTDSDPPHLPPSLPQWMWSSNVAIYSNQGSVHYLDDERPPWGWSDGSTENSKMSFSVSKLFLLLEIPLAIPRRLTIPMVIEELWSKPYAVASASLAPILLAFLWSTQDNVSNHGVILSYCAGVAVGCTLGILAYRFTVSDHPPPQFLLPWVLGGFIMSIVWFYIIANELVALLVAFGIIFGVNPSILGLTVLAWGNSMGDLMSNVALALDGEDGVQIALSGCYAGPMFNTLVGLGISLLIGAWSKKPSLYVVPEDRSLFYTMGFLITGLLWALLVLPRNNMHPNRILGMGLVTLYLIFLSFRVCTSMGLIALAGLS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00415 649 Gene3D - 176 309 IPR044880 -
Cca11g00415 649 Gene3D - 414 637 IPR044880 -
Cca11g00415 649 Pfam Sodium/calcium exchanger protein 484 635 IPR004837 GO:0016021|GO:0055085
Cca11g00415 649 Pfam Sodium/calcium exchanger protein 146 288 IPR004837 GO:0016021|GO:0055085
Cca11g00415 649 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 10 645 - -
Cca11g00415 649 PANTHER CATION/CALCIUM EXCHANGER 4 10 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00415 Cca-Chr11 5710183 5712817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00415 95 641 Antiporters AT5G17850 43.013 1.09e-125 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00415 K13754 - gmx:100796101 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00415 11 5710183 5712817 Cca11g00415 11 5710183 5712817 ECH