Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00412 ATGCTTTGCAGATTTGGCCAACCTATCAAAGTGAATTGGGCATATGCTAGTGGTCAAAGGGAGGATACATCAGGTCATTACAGCATATTTGTTGGTGATCTGAGTCCTGAGGTTACAGATGCTACGCTGTTTGCATGCTTTTCTGTCTACCCCACTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTTCGTAATCAACAGGATGCACAAAGCGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGgttggatggctcaacaaggtgtcggcgtttcgtatcggcaactcatgaggaatcgtgcccccgccgccgaagaccataggagtgtggcaatagatcaacggccaGCAACACAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTCCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTCAGGTACAGTACTCATGCTGAAGCAGCTCTTGCTATTCAGATGGGGAATGCCCAATCGCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCAGGAACTGCATCAAATCCCCTTCCCCCGCCTGCTGCTGCATCTCTGCCTGGTCTGTCTGCAACAGATCTTTTGGCATATGAACGACAGCTGGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCTCAAGGGCAACATCCTCTTAAACAGGCAGCCATTGGATTGATTAGTCAGCCGTTTCTCGAGTAG 894 0.4195 MLCRFGQPIKVNWAYASGQREDTSGHYSIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSVVELTNGSSGWMAQQGVGVSYRQLMRNRAPAAEDHRSVAIDQRPATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGLISQPFLE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00412 297 SUPERFAMILY RNA-binding domain, RBD 20 112 IPR035979 GO:0003676
Cca11g00412 297 SMART rrm2_1 28 101 IPR003954 GO:0003676
Cca11g00412 297 CDD RRM2_PUB1 28 102 - -
Cca11g00412 297 Gene3D - 147 233 IPR012677 -
Cca11g00412 297 SMART rrm1_1 157 225 IPR000504 GO:0003723
Cca11g00412 297 SMART rrm1_1 28 101 IPR000504 GO:0003723
Cca11g00412 297 Gene3D - 16 120 IPR012677 -
Cca11g00412 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Cca11g00412 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 215 IPR000504 GO:0003723
Cca11g00412 297 SUPERFAMILY RNA-binding domain, RBD 166 236 IPR035979 GO:0003676
Cca11g00412 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 229 IPR000504 GO:0003723
Cca11g00412 297 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 290 - -
Cca11g00412 297 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 4 290 - -
Cca11g00412 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00412 Cca-Chr11 5663658 5673180 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00412 25 222 Eukaryotic Initiation Factors Gene Family AT1G49760 28.856 9.92e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00412 K13201 - gmx:100814415 469.544