Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00409 ATGGCAACTCAATTAACATTCCCCAACTGGCTGGCAACCGCCGCCACATGTTTGGCAAGCTTGGCCGTCCTCCTCCTGATTCTCCGGCGCCTCAGCCGCCGCAGATACAACTTGCCACCGGGCCCAAAGCCCTGGCCCATCATAGGCAACCTGAACCTGATAGGATCCCTCCCGCACCGCTCCATCGACTCCCTCAGCAAAAAATACGGGCCCCTCATGCACGTGTGGTTCGGGTCCAACCCAATCGTGGTTGGGTCCTCGGTGGAAATGGCAAAGGCCATCCTGAAAACCCACGACGTCAGCCTCGCGGGCAGGCCCAGATTCTCGGCAGGCAAATACACGACCTACAACTACTCGGACATAACGTGGTCCCAATACGGCCCATACTGGCGGCAGGCCCGTAGAATGTGCCTGATGGAGCTTTTCAGCGCGAAACGGTTGGAGGAGTACGAGTACATTAGAAAAGAGGAGCTACGCGCTGTTCTCAACGAACTCTTCCACTCCGCCAACAGAACCGTTCTGTTGAAGGACCACCTTTCCAACCTTAGCCTCAACGTCATAAGCCGCATGGTGTTGGGGAAGAAGTACCTCCAAAAATCCGAAAACGCCATCGTTTCCCCCGAGGACTTTAAGAAGATGCTTGATGAGTTGTTTTTGCTTAACGGGGTTTTGAACATTGGGGACTTCATTCCCTGTATAAATTTCTTGGACGTTCAGGGCTACATCAAGAGGATGAAGGCTTTGAGCAAGAAGTTTGATCGTTTTATGGAGCATGTGTTGGATGAACACATTGAGAGGAAGAAAGGGGTCAAGGATTACGTGGCCAAAGACATGGTGGACGTGCTTCTTCACCTTGCCGAGGATCCCACTCTCGAGGTCAAGCTCGAGAGGCATGGGGTCAAGGCTTTTACACAGGACCTGATAGCGGGTGGGACAGAGAGTTCAGCTGTAACAGTGGAATGGGCAATCTCTGAGCTATTAAGAAGGCCAGAGATTTTCAAGAAAGCAACAGATGAGTTAGACAGAGTAATAGGGAGAGAGAGATGGGTTGAAGAGAAGGACATTGTGAATTTGCCTTACATCAATGCCATAGCGAAGGAAGCAATGAGGCTGCACCCTGTGGCACCAATGTTGGTGCCAAGGCTAGCCAGGGAGGACTGCCAAGTTGGAGGCTATGACATCCCCAAAGGCACCCAAGTGCTTGTGCATGTGTGGAGTATTGGAAGAGACCCTACAATCTGGGACAACCCTGAAGAGTTCCAACCAGAGAGGTTTCTTGGTAAGGAGATTGATGTGAGAGGGCATGACTACGAGTTGTTGCCATTTGGTGCTGGCAGAAGGATGTGCCCTGGCTACCCTCTTGGCCTTAAGGTCATTCAGTCAAGTTTGGCCAACCTTTTGCATGGTTTTAACTGGAGATTGCCTCATGGTGTTAAAAGTGAGGAGTTGGATATGGATGAGATTTTTGGCTTGTCTACACCTAAGAAGATACCTTTGGAGACTGTTGTCCAGCCTAGACTTCCACATCATCTTTATTCCCTCTGA 1545 0.5087 MATQLTFPNWLATAATCLASLAVLLLILRRLSRRRYNLPPGPKPWPIIGNLNLIGSLPHRSIDSLSKKYGPLMHVWFGSNPIVVGSSVEMAKAILKTHDVSLAGRPRFSAGKYTTYNYSDITWSQYGPYWRQARRMCLMELFSAKRLEEYEYIRKEELRAVLNELFHSANRTVLLKDHLSNLSLNVISRMVLGKKYLQKSENAIVSPEDFKKMLDELFLLNGVLNIGDFIPCINFLDVQGYIKRMKALSKKFDRFMEHVLDEHIERKKGVKDYVAKDMVDVLLHLAEDPTLEVKLERHGVKAFTQDLIAGGTESSAVTVEWAISELLRRPEIFKKATDELDRVIGRERWVEEKDIVNLPYINAIAKEAMRLHPVAPMLVPRLAREDCQVGGYDIPKGTQVLVHVWSIGRDPTIWDNPEEFQPERFLGKEIDVRGHDYELLPFGAGRRMCPGYPLGLKVIQSSLANLLHGFNWRLPHGVKSEELDMDEIFGLSTPKKIPLETVVQPRLPHHLYSL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00409 514 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PANTHER CYTOCHROME P450 71A1-LIKE 9 505 - -
Cca11g00409 514 PANTHER STEROID 21-HYDROXYLASE-RELATED 9 505 - -
Cca11g00409 514 SUPERFAMILY Cytochrome P450 39 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 Pfam Cytochrome P450 39 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cca11g00409 514 Gene3D Cytochrome P450 28 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g00409 514 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00409 Cca-Chr11 5598638 5601532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00409 11 514 Cytochrome P450 AT5G07990 41.279 9.73e-142 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00409 K20623 - gmx:100790480 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00409 11 5598638 5601532 Cca11g00409 11 5598638 5601532 ECH