Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00408 ATGCCTTCCAAGAGGCTTGAATGGAAATCCTTAGTACTTGGTTGTTTCAAGGCCAAAACCCCATCCTTGGAATCTCCAAATATAGTTTCCAAGAAGACATCTTCAAGTAGAATCTTCCTCTCTGATTTGAGTGATTACTCATCACTCTCTATTATGAGTGATTTATCCAATTCCCTTGTGGGATCAAATCTTCATATTTTCACTTACCAAGAGCTAAAAGAGATTACACATGGCTTCAGCAAAATCAACATTCTTGGGGAAGGGGGGTTTGGGAAGGTGTATAAAGGATTTATAGATGACAATCTTAGGCCTGGATTGAAAGCCAAGACTGTGGCAGTTAAGGCCTTAAACTTGGATGGTAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAGTCTTTCTGGGGCAGTTGAAGCATCGTCATCTGGTAAACTTAATTGGCTACTGCTGCGAAGATGAACATAGGCTTCTTGTGTATGAATACATGGAGAGAGGCAATCTAGAGGAAAAACTTTTCAAAGGTTATGTAGCAGCTTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCAGCCAAGGGACTAATGTTTCTTCATGAAGAAGAGAAACCTGTCATATATAGAGATGTCAAGGCCTCAAACATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGATTTCGGCTTAGCAATAGATGGACCAGAAAAAGATCAAACATATATCACAACTAATGTAATGGGTACACATGGTTATGCTGCTCCAGAGTACATCATGACAGGCCATTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTTCTCTTAGAGCTTCTCACAGGAAAGAAATCTGTGGACAAAAAACGACCCACCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAGGACTCCCACAAACTTGAAAGAATAATTGACACAAGACTTGAGGACCAGTACTCAACAGAAGGGGCTAGAAAGTTTGCATCTTTGGCTTATCAATGCCTTAGTCCTCATGCAAAGTGTAGGCCCACCATGCGAACCGTGGTTAAAACCTTAGAGCCTCTGTTGCAATTGAAAGATATCCCAGTTGGGCCTTTTGTGTATGTGGTGCCCAGTGATGAAGATTTGCTCAAAGTGAATGAAAAAGGAAAAGAAAATGACTGTGATGAGATCAACCAAGGTGAGTTAAAAGCCAAAGAAGAAGAAAAGGTTGAGAAAAAAGAGAAGGGTCACCAAAGGCAACGAAAAAGTCGTCGCAATAGACGTAGGGTTAAGCCATTGAGGTCTAGGGCTGTTTACTCTGACACTGCTCTGTATAAAACTCTTGGTACCAATCTGTATTCTCCCAAACAAGCACCATAA 1374 0.4148 MPSKRLEWKSLVLGCFKAKTPSLESPNIVSKKTSSSRIFLSDLSDYSSLSIMSDLSNSLVGSNLHIFTYQELKEITHGFSKINILGEGGFGKVYKGFIDDNLRPGLKAKTVAVKALNLDGKQGHREWLAEVVFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIAIGAAKGLMFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEKDQTYITTNVMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREQDLVEWARPLLKDSHKLERIIDTRLEDQYSTEGARKFASLAYQCLSPHAKCRPTMRTVVKTLEPLLQLKDIPVGPFVYVVPSDEDLLKVNEKGKENDCDEINQGELKAKEEEKVEKKEKGHQRQRKSRRNRRRVKPLRSRAVYSDTALYKTLGTNLYSPKQAP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00408 457 Gene3D Phosphorylase Kinase; domain 1 45 161 - -
Cca11g00408 457 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Cca11g00408 457 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Cca11g00408 457 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00408 457 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Cca11g00408 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca11g00408 457 MobiDBLite consensus disorder prediction 414 431 - -
Cca11g00408 457 SMART serkin_6 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00408 457 PANTHER BNAA02G16030D PROTEIN 27 415 - -
Cca11g00408 457 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Cca11g00408 457 PANTHER OS01G0588500 PROTEIN-RELATED 27 415 - -
Cca11g00408 457 MobiDBLite consensus disorder prediction 403 434 - -
Cca11g00408 457 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00408 Cca-Chr11 5576321 5578594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00408 27 361 Receptor kinase-like Gene Family AT3G58690 46.921 3.46e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g00408 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00408 - - gmx:100790454 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02542 11 52575787 52578281 Cca11g00408 11 5576321 5578594 ECH
Cca11g00408 11 5576321 5578594 Cca11g00408 11 5576321 5578594 ECH
Cca11g00408 11 5576321 5578594 Cca05g00458 05 10030842 10033755 ECH