Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00405 ATGTCCCATCAGGAGCAAGCCGTAGTGTCCCTTCTCTCCCAGCTCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACTTCCACCGCCCTACGCAAGCTCCGCCACGCCCCTTCCCTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGACTCTAACTCTCACGACGGTCAGATTGTAATTGCCCGCGGCACCGTCGATGCCAAGTCCGCCGTCGACGGCTCCTGGAAAACGCTCAGACCCGGTGTCCTCGTTTCGCGCGAGTCCGGCGATAAAGGCGTTATTCTTCAAAGAACCCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACCTCCTTAAGGAAGGTGCCTTTTGTTCTTATCGATATTGGACAGAGACCAAATAGTGAATATGTTGTTGTCAACATGGATGGCTCAAGACATCCGTTGCCTCTGACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCTTTGGGGAAGGATATTACTGCTGTTGGAGTTTGCAGCTTAAAAAATGGAATTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCATCAAAACGAAAGTACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGATCCTTAGTTATGCCGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACACAGGCAGCTCCAGCAACAGAGGCAAGCGGTGAGAGATGTTGAACCTCAGGTGGATGAGGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGCCTAATGAGGAGAAGGCGTTCTGTCTTCATCCCCTGTGGTCATCTTGTGTGTTGCCAAGGCTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGTATTTATGAATCTTGA 1146 0.4782 MSHQEQAVVSLLSQLALSFDGAVLGFALAYAAVRTLFKFTATSTALRKLRHAPSLSVSDLRSLLADSNSHDGQIVIARGTVDAKSAVDGSWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDIGQRPNSEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGVCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKVLFWGGIALGSMSVGILSYAVVRNWNKWKQWKQHRQLQQQRQAVRDVEPQVDEEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00405 381 SUPERFAMILY RING/U-box 328 374 - -
Cca11g00405 381 Pfam Zinc finger, C3HC4 type (RING finger) 327 374 - -
Cca11g00405 381 ProSiteProfiles Zinc finger RING-type profile. 329 369 IPR001841 -
Cca11g00405 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 381 IPR013083 -
Cca11g00405 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 381 - -
Cca11g00405 381 SMART ring_2 329 368 IPR001841 -
Cca11g00405 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 381 IPR044247 GO:0004842
Cca11g00405 381 Pfam E3 Ubiquitin ligase 135 280 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00405 326 378 C3H Transcription Factor Family AT3G06140 39.623 1.51e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00405 K15688 - gmx:100811939 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00405 11 5484405 5491405 Cca11g00405 11 5484405 5491405 ECH