Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00404 ATGATCATGGAACCAAACTCAACATCAGATCACACTCTGGACTGGTTTGAAGGTCCTGTTTCTTTTTTTCCACTTCCACCATTCTTGGATGATCCATATAACTCCAGTGACATCCAAGAGTATCAGTTGTGGGATGAAGACATAACCAGCCACTACCAAACTGATGCCAACACCAATTCCCCTAATGCCACCAACATTGATACTAGCACACCCCTTGAGCCTTGTGGCTCCAACAACCTACCACTTTCTGACTTGGCCAAGAAAAGAAGTGCCACTGATGAGTCAAGTCTCAAACCATCACAAAGCCACAAGCATAAGAAAATCAAGAGCCGTCCAATGAATAATGAAGCAGAAAATGGAGAAGCAGTTAGAAAATCTGGTGGCAACAAGAAAGGTGGAGCAAAGGGTGTAGGAAACAACTGCAACAACAAGGAAGGTCGGTGGGCTGAACAGTTGCTTAACCCTTGTGCTGCAGCCATAACTGGTGGAAACGTGAACCGTGTTCAACACCTCTTGTATGTCCTCCATGAGCTAGCATCACCTACTGGTGATGCTAACCACAGGCTCGCAGCACATGGCCTTAAAGCACTGACACAACATCTATCATCTTCTACTACATCTGTTACCACTTCAGGGTCCATAACTTTTGCATCAACTGAGCCTAGGTTCTTCCAAAAGTCACTACTCAAGTTCTATGAGGTTAGCCCGTGGTTTTCCTTTCCTAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGTGAAGACCCAAATAACTCACGCACCCTTCACATCCTTGAAATTGGAGTATCTCATGGCATGCAATGGCCAACGCTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTGGTCACTGCTTCCTCCACTGAAAATAATGATCAAAATTACATTGACACACCATTTTCTATTGGTCCTCCTGGTGATAACTTCTCTTCTAGCCTACTTGGTTTTGCTCAGTTCATGAACGTTAACTTGCAGATAAACAGGCTTGATAATTGTTCATTACAGACACTGAATGCTCAAAGTGTTGACACCTCCCCGGATGAGATCTTTGTTGTGTGTGCACAGTTTAGATTGCATCAGTTAAATCACCACACTCCTGATGAGAGGAGTGAGTTTCTGAAAGTGTTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGAATGTTGTTGCAATTGTTGTGGGGATTTTGCCACTGGATTCTCTCGGAGAGTCGAGTACTTGTGGAGATTTTTGGACTCAACAAGTGCGGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGGGTGATGGAAGGTGAGGCTGCGAAGGCTTTGACAAACCTTCGTGCGATGAATGAAGGGAAGGAAAAATGGTGCGCGAGAATGAAGGAAGTGGGGTTCGTTGGGGAAGTATTTGGAGAGGATGCAATAGATGGCGGAAGAGCTTTGTTGAGGAAGTATGATAATAATTGGGAGATGAAAGTGGAAGATGAGAATGCTAGTGTGGGACTATGGTGGAAAGGTCAACCTGTTTCTTTCTGTACTTTGTGGAAGCTTGATGGGAATGATCAGAGTTCAACATTCACATCATGA 1632 0.4504 MIMEPNSTSDHTLDWFEGPVSFFPLPPFLDDPYNSSDIQEYQLWDEDITSHYQTDANTNSPNATNIDTSTPLEPCGSNNLPLSDLAKKRSATDESSLKPSQSHKHKKIKSRPMNNEAENGEAVRKSGGNKKGGAKGVGNNCNNKEGRWAEQLLNPCAAAITGGNVNRVQHLLYVLHELASPTGDANHRLAAHGLKALTQHLSSSTTSVTTSGSITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLGEDPNNSRTLHILEIGVSHGMQWPTLLEALSRRPGGPPPLVRLTVVTASSTENNDQNYIDTPFSIGPPGDNFSSSLLGFAQFMNVNLQINRLDNCSLQTLNAQSVDTSPDEIFVVCAQFRLHQLNHHTPDERSEFLKVLRNMEPKGVILSDNNMECCCNCCGDFATGFSRRVEYLWRFLDSTSAAFKGRESDERRVMEGEAAKALTNLRAMNEGKEKWCARMKEVGFVGEVFGEDAIDGGRALLRKYDNNWEMKVEDENASVGLWWKGQPVSFCTLWKLDGNDQSSTFTS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00404 543 MobiDBLite consensus disorder prediction 87 101 - -
Cca11g00404 543 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 531 IPR030015 -
Cca11g00404 543 ProSiteProfiles GRAS family profile. 140 531 IPR005202 -
Cca11g00404 543 MobiDBLite consensus disorder prediction 52 140 - -
Cca11g00404 543 Pfam GRAS domain family 150 531 IPR005202 -
Cca11g00404 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 531 IPR005202 -
Cca11g00404 543 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00404 Cca-Chr11 5481904 5483931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00404 1 531 GRAS Transcription Factor Family AT3G13840 50.093 2.13e-175 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g00404 GRAS 2.5e-70 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00404 - - gmx:100806550 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00404 11 5481904 5483931 Cca11g00404 11 5481904 5483931 ECH
Cca11g00404 11 5481904 5483931 Cca10g00312 10 3318818 3320919 PCT