Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00394 ATGATGAGTGCTAGTGCAAGTGCAAGAAACAGGTCCCCTTTCACACCAACTCAGTGGCAAGAACTTGAACAACAGGCTCTTGTTTTTAAATACATGGTCACAGGAACACCTATCCCACCAGATCTCGTCTACTCTATTAAAAGAAGTCTAGACTCTTCAATTTCTTCAAGGCTCTTCCCACACCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACACCTCCCAAACAATCCCTTCCTATAGCAGAAACCTTTCCTTGaacaacaacaacagcaaccccaacaTAACTTCACCCTCATCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATATCCTGCGAGTCTCAACCCTTTCCCCAATCTTACCAAAACTCTTCTCTCAACCCCTTCTTCTACTCCCAATCAAACTCCTCCAGACCCCCAGATACTGATTTTCCACCTCAAGATGCCACCACCCACCAGCTTTTCATGGACTCTGGCTCTTATTCTCATGATGAAAAGGATTATAGCAGGCATGTTCATGGAACAAGGGAGGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCGGGATCAGCTAGGAGCTATACTGACTCATATCAGCAACTATCAATGAGCTCCTACAAGTCCTATACAAACACCAACTTTCAGAACATGAATGACAACACCCCAAGACAGCAAGAGCAACAACACTGTTTTGTTCTGGGAACTGACTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAGCTGAGACAAGTCAGAGACCCCTCCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACAGATGAATGA 1035 0.4444 MMSASASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLVYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYSRNLSLNNNNSNPNITSPSSFPFSPLPSSISCESQPFPQSYQNSSLNPFFYSQSNSSRPPDTDFPPQDATTHQLFMDSGSYSHDEKDYSRHVHGTREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYTNTNFQNMNDNTPRQQEQQHCFVLGTDFKSTRPSKEKEAETSQRPLHRFFGEWPPKNTTDSWLDLASNSRIPTDE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00394 344 MobiDBLite consensus disorder prediction 298 344 - -
Cca11g00394 344 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g00394 344 MobiDBLite consensus disorder prediction 182 206 - -
Cca11g00394 344 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g00394 344 MobiDBLite consensus disorder prediction 299 314 - -
Cca11g00394 344 MobiDBLite consensus disorder prediction 119 159 - -
Cca11g00394 344 MobiDBLite consensus disorder prediction 105 159 - -
Cca11g00394 344 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 6 343 - -
Cca11g00394 344 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Cca11g00394 344 MobiDBLite consensus disorder prediction 329 344 - -
Cca11g00394 344 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g00394 344 Pfam WRC 79 121 IPR014977 -
Cca11g00394 344 PANTHER - 6 343 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00394 Cca-Chr11 5341936 5344600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00394 1 342 GRF Transcription Factor Family AT3G13960 40.500 8.93e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca11g00394 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00394 - - vun:114166369 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00394 11 5341936 5344600 Cca11g00394 11 5341936 5344600 ECH