Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00392 ATGAGTAACTGGTTGGGCTTCTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGGGGTTACCCTCCTCCTCCTTCTCACCCTCACTTGTCTGCTATGCCTTTGCGTTCTGATGGTTCTCTTTGTGTTTCTGACTCCTTTAGCCACTCTGCTGCACCTCAAGAATGGAGATATGATAATGCAATAGGTGGAGGGAATTCCAATGAAGAAGGTCCAAAGCTTGAAGACTTTTTGGGTTGCTACTCAAACTCCCCCATGGCTGAATCTAAAGTCTTTTGCCAAGACTCTCAACATGACCAAAACCAAGGACAGAATAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATACAGAGATTGAAGCTGGGGAGAGTCTCACAAACCCTTCTTCCTTGCTCCAGTCTTTCCATGCATATAATGATAACTCACATGCCCTTATTCCCACCAATGGCATGTATAAGTCATGGTTAGCACAAACTCAGTTTTCTGAAGGAAAACCTTCAGCTGAGGCTAATGGGTGCAATTTCCAATCTCTGTCCCTCACTATGAGCCCTAGTGTGCAAAATGGGGTTGGTGCAATTTCCTCTGTTCAAGTGAGTGATGACAATCGGAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGCTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATCTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCCGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAATAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTACGATGTGAAGAGAATCTGCTCAAGTTCCACTCTCATTGCTGGAGATCTTGCAAAACGGTCTCCTAAGGACTCGGCTCCTGCCGCGGCAGCTGAGGATTTCAACTCATGTGGTTCATCGATGCCGGCTCAGCCACCCCCCTTGGCTATAACTGATGGTGAACATTCTGATGAGTTATCCAACATGATGTGGAATGCAAACAGTGATGAACAAGCACAGAATGAGAGTGCTAACATCAACAATGTGACCGAGTCATCACAACAGGTTTCACCAAGCAACAACAAGGATGGTTTGAACCCTCAAAGCCCCAAGTGTTCTGTGGGGCTACCTAATGAGTTTGGAGTGAGTGGTGCAGATTATGGACATGGTTACTTCACCCTGGATGGACCAAAATATGATGATGGGAACAATGAAAATGACCACATGAACAACAACAGGCTTGGAAACTTGGGATTGGTTAATCAAGTTCCCATGTTTGCTTTATGGAATGAATGA 1719 0.4474 MSNWLGFSLTPHLRIDEEFGRENQERGGGGYPPPPSHPHLSAMPLRSDGSLCVSDSFSHSAAPQEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPMAESKVFCQDSQHDQNQGQNNVSKINVNVAPSFCTNTEIEAGESLTNPSSLLQSFHAYNDNSHALIPTNGMYKSWLAQTQFSEGKPSAEANGCNFQSLSLTMSPSVQNGVGAISSVQVSDDNRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSAPAAAAEDFNSCGSSMPAQPPPLAITDGEHSDELSNMMWNANSDEQAQNESANINNVTESSQQVSPSNNKDGLNPQSPKCSVGLPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00392 572 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Cca11g00392 572 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 497 - -
Cca11g00392 572 SUPERFAMILY DNA-binding domain 244 313 IPR016177 GO:0003677
Cca11g00392 572 Gene3D AP2/ERF domain 244 313 IPR036955 GO:0003700|GO:0006355
Cca11g00392 572 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
Cca11g00392 572 MobiDBLite consensus disorder prediction 22 45 - -
Cca11g00392 572 ProSiteProfiles AP2/ERF domain profile. 245 311 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 Pfam AP2 domain 245 303 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 Pfam AP2 domain 346 397 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 MobiDBLite consensus disorder prediction 491 511 - -
Cca11g00392 572 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 MobiDBLite consensus disorder prediction 427 462 - -
Cca11g00392 572 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 41 497 - -
Cca11g00392 572 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 SMART rav1_2 245 317 IPR001471 GO:0003700|GO:0006355
Cca11g00392 572 CDD AP2 244 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00392 Cca-Chr11 5285785 5289729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00392 1 433 AP2-EREBP Transcription Factor Family AT1G72570 51.398 2.41e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca11g00392 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00392 K09285 - gmx:100805489 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00392 11 5285785 5289729 Cca11g00392 11 5285785 5289729 ECH