Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00390 ATGGGAAGGAGCCCTTGTTGTTCTAAGGAAGGCTTGAACAAAGGAGCATGGACAGCTTTGGAAGACAAAATTCTCACAGAATACATTAACACTCATGGAGAAGGAAAATGGAGACACCTGCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAGAGTTGTAGGCTAAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGCAACATTACTAATGATGAAGAGGAGCTTATAATCAGGCTTCACAATCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATATCGGAAGGAAGCTTCAAAATGGTGTTGCACGAAGCACTTTGAACACAGTTCAACAAGATCGAAATCTCAAAAACAAAGAGTGGCATCACTATCCCAATTACTCACCAGATCATAAGGTTTCGTGTCTTGTTCAGACTAAGGCAACAAGGTGGACTAAGGACATTACTCCACAAAATGAAGGGATCAAGAACAATGTTATTGGTGATAACAAAATTGTGTCTCCTTCTTCAGAGAATAACAAGGATCCAGTGTTGGATTTCATGGCAGACCTTGAGATGGATGGCAATTTCTTCTCGGAGTTACTGAAGATGGATTTGCCAGAATCATCTTGTCATAATGAAAATAAGATAGTTGAAGACAATGGTAACCCTAGCACAGTTGACAAGCGATATTTGTCTCCAAAATCATCCAGTGATACCACCCAATTCCCTTGGGGTGATTCATTGTATGATACAAATTTTGATTTTCTGCCAGTCACAACTTTCATGGAGTCCGGATTTGATTGGCTCTGA 846 0.4066 MGRSPCCSKEGLNKGAWTALEDKILTEYINTHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGVARSTLNTVQQDRNLKNKEWHHYPNYSPDHKVSCLVQTKATRWTKDITPQNEGIKNNVIGDNKIVSPSSENNKDPVLDFMADLEMDGNFFSELLKMDLPESSCHNENKIVEDNGNPSTVDKRYLSPKSSSDTTQFPWGDSLYDTNFDFLPVTTFMESGFDWL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00390 281 MobiDBLite consensus disorder prediction 225 251 - -
Cca11g00390 281 CDD SANT 16 61 IPR001005 -
Cca11g00390 281 Gene3D - 14 66 - -
Cca11g00390 281 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca11g00390 281 MobiDBLite consensus disorder prediction 227 251 - -
Cca11g00390 281 SMART sant 13 63 IPR001005 -
Cca11g00390 281 SMART sant 66 114 IPR001005 -
Cca11g00390 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 207 - -
Cca11g00390 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g00390 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g00390 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 207 - -
Cca11g00390 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g00390 281 CDD SANT 71 112 IPR001005 -
Cca11g00390 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g00390 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g00390 281 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca11g00390 281 Gene3D - 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00390 Cca-Chr11 5263724 5265228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00390 1 116 MYB Transcription Factor Family AT2G16720 75.862 2.10e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g00390 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00390 K09422 - gmx:100804950 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02526 11 52403230 52404402 Cca11g00390 11 5263724 5265228 ECH
Cca11g00390 11 5263724 5265228 Cca11g00390 11 5263724 5265228 ECH
Cca11g00390 11 5263724 5265228 Cca05g00624 05 14684805 14686970 ECH