Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00389 ATGGGTAGACGTCCCTGCTGTCCCAAAGAGATAAACAAAGGTGCATGGTCTCGTGAAGAAGATCAAACCCTCTCCAAATATGTTGCCATTCATGGAGAAGGCAAATGGCAGAAGGTTGCACAAAATGCAGGTTTAAAGCGATGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCTGGTATAAAAAGAGGTGACATCTCCGTGGATGAAGAGGATTTGATTATAAGACTTCATCCTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTATTGGAACACTAATCTGTCAAAGAAGTTACAGAAGCAGCCAACATCATCATATGTTTCATCTCTTCAGCGCAAACATCATGAAGAAGAGACCAAACAAGTGCACGTGGCACCCGAAGCTCCACGTCCTAGGAGAGTTAAGGCAGTTCAACATAGTAAAATGTTGGATAATGGAGTGTGTGAGAATTGTACTCCCTCAAATAAAGTAGAGGGTAGTAGTGATGAAGCTTCTTTTACTGATTTCCTCATTGATATTGATCAAAGCCATTTGTTGAATATTGGTGATGATTCCAACTCAAAGGTGCTGCCACAAATGGAAGAAGAAGACCATAACAACATTAACAATGTAGGCTTAACCAACAGTCCTAGCTCATCACCACCTTCTGATCATTGTCACCATCTCTTGCCAGAGAAATTTGACTCTCTGGAAACCCTTTTGGATGTGGAGCTTAAGAGGATGGCTTCCTTTCTGGGACTTGAAAATGATTGA 804 0.4142 MGRRPCCPKEINKGAWSREEDQTLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDLIIRLHPLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSYVSSLQRKHHEEETKQVHVAPEAPRPRRVKAVQHSKMLDNGVCENCTPSNKVEGSSDEASFTDFLIDIDQSHLLNIGDDSNSKVLPQMEEEDHNNINNVGLTNSPSSSPPSDHCHHLLPEKFDSLETLLDVELKRMASFLGLEND 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00389 267 MobiDBLite consensus disorder prediction 127 150 - -
Cca11g00389 267 MobiDBLite consensus disorder prediction 118 150 - -
Cca11g00389 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca11g00389 267 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca11g00389 267 Gene3D - 7 66 - -
Cca11g00389 267 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Cca11g00389 267 PANTHER MYB TRANSCRIPTION FACTOR 1 263 - -
Cca11g00389 267 CDD SANT 15 60 IPR001005 -
Cca11g00389 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Cca11g00389 267 Gene3D - 69 142 - -
Cca11g00389 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Cca11g00389 267 SMART sant 12 62 IPR001005 -
Cca11g00389 267 SMART sant 65 113 IPR001005 -
Cca11g00389 267 CDD SANT 70 111 IPR001005 -
Cca11g00389 267 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 263 - -
Cca11g00389 267 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca11g00389 267 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00389 Cca-Chr11 5250425 5252253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00389 1 115 MYB Transcription Factor Family AT2G16720 64.655 1.38e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g00389 Myb_DNA-binding 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00389 K09422 - gmx:547568 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00389 11 5250425 5252253 Cca11g00389 11 5250425 5252253 ECH