Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00385 ATGCCATATTCTTCTCGTGATAACATCAAATATGTTGTATTTGTTTTTGTTTGGCTCTTGCTGGCAAAGGAAACAGCAGAAAACAACAATCCTTGGGATCCCAGTGACACCCCTCACATAAagtacgatgtttttgttagctttagaggtgcagacattcgccaagatttccttagccatttggttgaggcattttatcgaaaccagattgctgcctttgtggattacaagattctcaaaggagatgaacttgctgaagcactgcttggagcaattcaaggatcactcatttcattggttatattttcacaaaGATACCCCGCAtatgcttcttcgcgttggtgtttgttggaacttgcgaaaattgttgagtgtagaaaagaagatggacagcttgtgctacctgttttctacagggtagatccttcacatgtgcgacatcagaaggggacttatgcagatgcctttgttgaacatgaaaGAAAATATAGTCTCACCACTTtacaaacatggagatcagctctgaatgaatctgctaatctatcaggatttgattcatcaacttttcgggatgaagctgagcttgttaaagaggtagttaaatgtgtgtcaaagaggttgaatcatgtgcaccaggttaactccaaaggacttgttggaattagcaaacgaattgcacatgtcgaatcgttgctacaattagaagcaagaggtgttcttattgtcggaatctggggcatggggggtattggtaagacaaccattgcgcaagaagtatatagtaaactgtgttctgaatatgaaggttgttgttttttggctaacataagagaagagtcagaaagacatggaatcatctctttgaagaaaaagcttttttcaacattattaggagaagatttgaaaattgacacaccaaatggattgcctcaatatgttgagagaaggcttcatcgtacgaaggttcttatcattcttgatgatgtcaatgattcaggacaactggaaattttagctggaacaagtgattggtttggatcaggtagtagaatcatcataacaactagagataagcaggtgctacctacagagtttgctaatatatacgaagttgaggcattaaactttgatgaatctttacggcttttcaatttgaatgcctttaaacaaaatcatcttgaaagagagtaccgtgagctatcaaagaaagtggttgattatgccaaaggcattcctctagttcttaaagttttggttccccttcttcgtggaaaaagtaaagaaatatggaaaagccacttagagagactcagaaaagtgcaaagcaaaaaggttcatgatattattaaactgagttatgatgatcttgattgggatgaaaagaagatatttttggatattgcatgtttttttgatggactgaatctgaaagtaaagtacgtagaatctttattgaaagatcatggtcattcagtggctgctgcattagaaaggttgaaggataaagctcttataagtgtttctcaagaaaatattgtatcaatgcacaacattgtgcaagaaacaggttggcaaattgctcaccaggaatctattgaagatcctagaagccaaagtcgattattagatcctgatcacatttatgaagtactaaaatacaacaagggtaacgaggctatcagaagcatagtcatcaacttgtcaggaatcaaggatttgcacttaaaccttgaaccgagtgaaaaaactttggcaagaagtgccggatgttgtgaatttaaagCTACTGAGTGGAACCGTTCTCTACTCTATGTTTGTGTGCATGTGGTTGATACTCCATGGAAACTGTGTTCTGCTTTGTCTTCACCGAAGCAAATTTCCAATCCAATTGTATACAAGCTTGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTGGGGGATTTTCTTGAGTGTGAAAACAGTGAAATGCATGTTGTTGCAGACACTGGGCAAAGTTTGGAGTGCATATCAATTGAAAGGTCATCTTCTGGGAATCTTAGATTGGAGTGCTCAGAAGGCACTGCAGAGGCAGATTTGGGGAAACTAAATGCAAAACTACAGTACATTGAGCAGATTTTGGAAAAGGTCAAAGAAGAAGAGAAACAACGCGTATCATGTGGATCACCTGTTCATTCTCATGTAAATATAGACAGTCAGTGTTCAGCTGATAAATTTCCTGTCGTGGATGGGAAGGTTCAATCCGAAAACCAGGAAACTCCTTCTATAGCATCAAGTTTAAATTATACTCATAGTAATCAATCTGGGAGTACTGATCAGTGTTCCAGACCTTCGGAAGGAGTAATAGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCAATTTGAAGCCTGATCTTTCAATGTCAGATGGAGAAATATGCTTGGACAAGCTATCAATCAGAGAACTTCATGAACTGTTCAAGGTAACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGCTGAAAAGAAGGATTGCCATGAGTTTAACCAACTCTTGTGATGTTTCAGCAACAACTTTCATTGTTAAAGATAACAAAATAGTTAGAAAATTTGAAGACAATTCTGGAAATATGAATGCCGCATCTTTAATCACTTCGGAAACTATGACTGAAGAAGAGGATGTCAACTTTAAGGATTCATCTGCTGTGAAGGCCCGGGAAATTGACGATAACCAAGTTGTTTCTGAAACAAAACTGAGAAATCACAGTATGGGATATGGACTGGAAGATGAGAATCACCAGACAGATCAAAGAGCTGCAAAAAGAATTCGGAAACCTACTAAGAGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAACACAGTCCTAGGTTGTTGATTTCTAATAGAACTGCAGGACATGGACATGTTTCTCCAACTTCATATGTCAGGCCTGCTGCTAGAAATGCTTTTTCAGAGTTGAGAACATATGTCACCAGATCAGACTCTCTTGGAGGTTCTGATGTCCAAATTCCTTGTGTGTCTCGGGTTCGGAGAAGTCGTCCAAGAAAAGATATCACTTCTCTAATGAAATTCCATCCGATTGGCATGGGTGAGGCTGCAAAATTGAGTAATAAGCTCCTTGAGCATAGTTCTGATGCTGATAGTGAGATCCCAGACAATGTTTTGAAGTCAAGAATGCCTGCAAAGTTTCATCAACCATCTTCAGAACCTGTGAAAGAGAAGCAATGTCCGGAAACAGGCACAGTTGAGCTCCGGCCGGAATTGAGGCCAAAAAGGGCAGATCCTTTCAGCCATACATCTGATGATGATATAGTTACTGTTCCCACTGCTAAAGGAGGGATGAGGAGGAAGCATCATCGTGCCTGGACTCTTGTCGAGGTTATAAAGTTGGTGGAAGGTGTGTCACGATGTGGAGCAGGGAGATGGTCTGAAATCAAACGGCTCTCCTTTTCATCGTACTCATATCGTACATCTGTGGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTCTGCACTGACACCTTCACCTGCTGATGATGGGATAAATTCGCGGAAGCATGGTACGGCTCCCATTCCTGAGAAAATTTTACTGCGTGTAAGAGAGCTTGCTGAGATGAATTCTCAGGTGCCTCCAAGTTATAGCTCAAACAAGTTTGCAGCTGGTGCAGGGAGTTTGCATGGAGGAGATAGATCAGGacctactcttctcttcttttctcctctctctctctctctGCGTTTTCGTTTTGTCATCGTGTTACTGTGTTTTCCGGGAACAATGGGTATCATTGAGAAGATCAAAGAAATTGAAGCCGAGATGGCTCGGACCCAGAAAAACAAAGCCACTGAGTATCATCTTGGGCAACTCAAGGCAAAGATAGCAAAACTAAGGACACAATTATTGGAGCCTCCAAAATCTACACTTTTGACAATGTTAACGGGCACACATTCCGAAGCTGCATCTTATGAGTTCACAACTCTGACCTGTATTCCTGGGATTATACACTATAATGATACTAAGATTCAGTTACTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGAAAGGGACGTGGGAGGCAGGTTATTGCTGTTACTAAATCTTCAGACATAGTACTGATGGTTCTTGATGCTTCCCAAAGTGAGGGTCATAGGCAAATATTGACCAGAGAGTTGGAAGCTGTTGGCTTGCGGTTAAACAAGAGACCACCTCAGATATATTTTAAAAAGAAAAAAACAGGAGGCATTTCATTCAACAGTACTTTGCCTTTGACTCATGTGGATGAGAAGCTTTGTTATCAGATTCTGCATGAGTACAAGATTCACAATGCCGAGATCCTTTTCCGTGAGGATGCCACAGTGGATGATCTCATAGATGTCATCGAAGGAAACCGTAAATACATGAAGTGTGTATATGTCTACAACAAGATAGATGTTATTGGTATTGATGATGTGGATAGATTAGCCCGCCAACCCAATTCTGTTGTCATTAGCTGCAATTTGAAGCTGAACTTAGACAGACTACTTGCGAGGATGTGGGATGAAATGGGTCTGGTTCGAGTTTACACAAAACCACAAGGCCAGCAGCCTGATTTCACTGATCCTGTGGTTCTTTCTGCTGATAGAGGTGGCTGCACTGTAGAAGACTTCTGCAACCATATACACAGAAGTTTGGTGAAGGATGTGAAGTATGTTCTGGTCTGGGGTGCTAGTGCAAGGCACTACCCACAACATTGTGGTCTTAGTCATAATCTTCGTGATGAGGATGTGGTTCAGATTGTTAAGAAAAAGGAAAAAGAAGAGGGAGGAAGGGGACGATTTAAATCACATTCGGACGCACCTGCTCGAATATCTGACAGACAGAAGAAGGCACCATTGAAGACATAA 4935 0.2784 MPYSSRDNIKYVVFVFVWLLLAKETAENNNPWDPSDTPHIKYDVFVSFRGADIRQDFLSHLVEAFYRNQIAAFVDYKILKGDELAEALLGAIQGSLISLVIFSQRYPAYASSRWCLLELAKIVECRKEDGQLVLPVFYRVDPSHVRHQKGTYADAFVEHERKYSLTTLQTWRSALNESANLSGFDSSTFRDEAELVKEVVKCVSKRLNHVHQVNSKGLVGISKRIAHVESLLQLEARGVLIVGIWGMGGIGKTTIAQEVYSKLCSEYEGCCFLANIREESERHGIISLKKKLFSTLLGEDLKIDTPNGLPQYVERRLHRTKVLIILDDVNDSGQLEILAGTSDWFGSGSRIIITTRDKQVLPTEFANIYEVEALNFDESLRLFNLNAFKQNHLEREYRELSKKVVDYAKGIPLVLKVLVPLLRGKSKEIWKSHLERLRKVQSKKVHDIIKLSYDDLDWDEKKIFLDIACFFDGLNLKVKYVESLLKDHGHSVAAALERLKDKALISVSQENIVSMHNIVQETGWQIAHQESIEDPRSQSRLLDPDHIYEVLKYNKGNEAIRSIVINLSGIKDLHLNLEPSEKTLARSAGCCEFKATEWNRSLLYVCVHVVDTPWKLCSALSSPKQISNPIVYKLVRVEGDGRLVPATDDEVMEVGDFLECENSEMHVVADTGQSLECISIERSSSGNLRLECSEGTAEADLGKLNAKLQYIEQILEKVKEEEKQRVSCGSPVHSHVNIDSQCSADKFPVVDGKVQSENQETPSIASSLNYTHSNQSGSTDQCSRPSEGVIESGSSASAVYSNLKPDLSMSDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFIVKDNKIVRKFEDNSGNMNAASLITSETMTEEEDVNFKDSSAVKAREIDDNQVVSETKLRNHSMGYGLEDENHQTDQRAAKRIRKPTKRYIEELSENESREHSPRLLISNRTAGHGHVSPTSYVRPAARNAFSELRTYVTRSDSLGGSDVQIPCVSRVRRSRPRKDITSLMKFHPIGMGEAAKLSNKLLEHSSDADSEIPDNVLKSRMPAKFHQPSSEPVKEKQCPETGTVELRPELRPKRADPFSHTSDDDIVTVPTAKGGMRRKHHRAWTLVEVIKLVEGVSRCGAGRWSEIKRLSFSSYSYRTSVDLKDKWRNLLKASSALTPSPADDGINSRKHGTAPIPEKILLRVRELAEMNSQVPPSYSSNKFAAGAGSLHGGDRSGPTLLFFSPLSLSLRFRFVIVLLCFPGTMGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVTKSSDIVLMVLDASQSEGHRQILTRELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEILFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDRLARQPNSVVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFTDPVVLSADRGGCTVEDFCNHIHRSLVKDVKYVLVWGASARHYPQHCGLSHNLRDEDVVQIVKKKEKEEGGRGRFKSHSDAPARISDRQKKAPLKT 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00385 1644 MobiDBLite consensus disorder prediction 767 790 - -
Cca11g00385 1644 Pfam TGS domain 1535 1611 IPR004095 -
Cca11g00385 1644 Gene3D - 1526 1618 IPR012675 -
Cca11g00385 1644 Pfam NB-ARC domain 229 453 IPR002182 GO:0043531
Cca11g00385 1644 Pfam C-terminal region of MMR_HSR1 domain 1429 1534 IPR031662 -
Cca11g00385 1644 CDD DRG 1320 1540 IPR045001 GO:0003924|GO:0005525
Cca11g00385 1644 Gene3D - 37 208 IPR035897 -
Cca11g00385 1644 SUPERFAMILY Homeodomain-like 1128 1188 IPR009057 -
Cca11g00385 1644 Pfam Myb-like DNA-binding domain 1133 1181 IPR001005 -
Cca11g00385 1644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1320 1548 IPR027417 -
Cca11g00385 1644 Coils Coil 701 724 - -
Cca11g00385 1644 Pfam 50S ribosome-binding GTPase 1320 1424 IPR006073 GO:0005525
Cca11g00385 1644 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 30 576 - -
Cca11g00385 1644 Pfam TIR domain 41 219 IPR000157 GO:0007165
Cca11g00385 1644 Gene3D - 209 367 IPR027417 -
Cca11g00385 1644 Gene3D - 1121 1230 - -
Cca11g00385 1644 TIGRFAM small_GTP: small GTP-binding protein domain 1320 1457 IPR005225 GO:0005525
Cca11g00385 1644 SUPERFAMILY "Winged helix" DNA-binding domain 443 552 IPR036390 -
Cca11g00385 1644 CDD SANT_TRF 1132 1182 - -
Cca11g00385 1644 Gene3D - 373 457 IPR042197 -
Cca11g00385 1644 ProSiteProfiles Myb-like domain profile. 1134 1181 IPR001005 -
Cca11g00385 1644 CDD TGS_DRG1 1532 1612 - -
Cca11g00385 1644 Gene3D - 1377 1482 - -
Cca11g00385 1644 Gene3D - 1271 1325 - -
Cca11g00385 1644 ProSiteProfiles TGS domain profile. 1533 1611 IPR004095 -
Cca11g00385 1644 PRINTS Disease resistance protein signature 408 422 - -
Cca11g00385 1644 PRINTS Disease resistance protein signature 241 256 - -
Cca11g00385 1644 PRINTS Disease resistance protein signature 316 330 - -
Cca11g00385 1644 SMART sant 1130 1183 IPR001005 -
Cca11g00385 1644 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 1320 1533 IPR031167 GO:0005525
Cca11g00385 1644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 467 IPR027417 -
Cca11g00385 1644 ProSiteProfiles TIR domain profile. 40 207 IPR000157 GO:0007165
Cca11g00385 1644 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 184 IPR035897 -
Cca11g00385 1644 SMART till_3 41 181 IPR000157 GO:0007165
Cca11g00385 1644 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1126 1185 IPR017930 -
Cca11g00385 1644 SUPERFAMILY TGS-like 1529 1611 IPR012676 -
Cca11g00385 1644 MobiDBLite consensus disorder prediction 1613 1644 - -
Cca11g00385 1644 ProSitePatterns GTP1/OBG family signature. 1360 1373 IPR006074 GO:0005525
Cca11g00385 1644 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 576 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00385 Cca-Chr11 5090344 5126087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00385 30 571 WRKY Transcription Factor Family AT4G12020 30.642 1.15e-64 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00385 K06944 - gmx:100775511 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00385 11 5090344 5126087 Cca11g00385 11 5090344 5126087 ECH