Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00384 ATGCTTGGATGGTGCACTCGTACCAGTCACATGCCATCACTTCCTACAACAGGAACATCTTTTGATGACAAGTTCTCACCTTGCATGAGTTTAGAGTCACATTCAATTACATTCCAGTACAAGGCTGCAGAAGGTAACATAAACCAGAATGAGTGTGTTATTTGCTTGACACCCTTTGAAGAGGAGGACAGTGTCCGTAAGCTTCACACTTGCAAGCACATCTTCCATACCTCTTGCATTGACAAGTGGCTTGGCTCTCATTCTGGATGCCCACTCTGCCGCACTCAGATTGATAAAGTGACTTCCCCAGATAACAGAGTGTCATTGGAAGGAAATGATCAGGATCAGATGATCATGATCATTGTGAACTCCTGA 375 0.4427 MLGWCTRTSHMPSLPTTGTSFDDKFSPCMSLESHSITFQYKAAEGNINQNECVICLTPFEEEDSVRKLHTCKHIFHTSCIDKWLGSHSGCPLCRTQIDKVTSPDNRVSLEGNDQDQMIMIIVNS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00384 124 ProSiteProfiles Zinc finger RING-type profile. 52 94 IPR001841 -
Cca11g00384 124 SUPERFAMILY RING/U-box 46 101 - -
Cca11g00384 124 Pfam Ring finger domain 50 94 IPR001841 -
Cca11g00384 124 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 114 IPR044675 -
Cca11g00384 124 SMART ring_2 52 93 IPR001841 -
Cca11g00384 124 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 23 114 - -
Cca11g00384 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 103 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00384 Cca-Chr11 5083467 5083841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00384 35 103 C3H Transcription Factor Family AT5G17600 48.571 8.22e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00384 - - gmx:102661636 210.305